View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0938-Insertion-7 (Length: 614)

Name: NF0938-Insertion-7
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0938-Insertion-7
NF0938-Insertion-7
[»] chr2 (15 HSPs)
chr2 (130-261)||(27645040-27645166)
chr2 (323-485)||(27645227-27645389)
chr2 (413-485)||(27645499-27645572)
chr2 (562-614)||(27645499-27645551)
chr2 (417-485)||(27554426-27554495)
chr2 (418-485)||(27554734-27554802)
chr2 (130-176)||(27549588-27549634)
chr2 (566-614)||(27554447-27554495)
chr2 (569-614)||(27554301-27554346)
chr2 (417-485)||(27554582-27554651)
chr2 (566-614)||(27554603-27554651)
chr2 (10-54)||(27644925-27644969)
chr2 (508-551)||(27645419-27645461)
chr2 (560-614)||(27645314-27645368)
chr2 (15-51)||(27549426-27549462)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 130 - 261
Target Start/End: Original strand, 27645040 - 27645166
Alignment:
Q  130 ggttaatgagattttggagtgaagaaggtttgtatttatagaccaaaaaggaacgggccacgcggtgtctcttctcttccttaacagagaagattttaaa 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||    
T  27645040 ggttaatgagattttggagtgaagaaggtttgtatttatagaccaaaaaggaacgggccacgcggtg-----tctcttccttaacagagaagattttaaa 27645134  T
Q  230 cccctaaattgatgaacaaaattaggatgggt 261  Q
    ||||||||||||||||||||||||||||||||    
T  27645135 cccctaaattgatgaacaaaattaggatgggt 27645166  T

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Target: chr2; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 323 - 485
Target Start/End: Original strand, 27645227 - 27645389
Alignment:
Q  323 tcagtttatctgtggttaatccaaaatttggtccaaaaatattttttgcgtgtgaattcttaccccttaagatattcctttnnnnnnnnngattttcatt 422  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||         |||||| |||    
T  27645227 tcagtttatctgtggttaattcaaaattcggttcaaaaatattttttgcgtgtgaattcttaccccttaaaatatttcttt-aaaaaaaagatttttatt 27645325  T
Q  423 aaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 485  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27645326 gaatgaaaaattaccatatacattatgaatacctttcgtatgattttgttcaaaggaggaaaag 27645389  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 413 - 485
Target Start/End: Original strand, 27645499 - 27645572
Alignment:
Q  413 gattttcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 485  Q
    |||||||||||||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||||||    
T  27645499 gattttcattaaatgaaaaattaccatatacatttcgaataccttttgtatgattttgttcaaaggaggaaaag 27645572  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 562 - 614
Target Start/End: Original strand, 27645499 - 27645551
Alignment:
Q  562 gattttcattaaatgaaaaactaccatatacatttcgaataccttttgtatga 614  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27645499 gattttcattaaatgaaaaattaccatatacatttcgaataccttttgtatga 27645551  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 417 - 485
Target Start/End: Complemental strand, 27554495 - 27554426
Alignment:
Q  417 ttcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 485  Q
    ||||||||||||||||||| |||| |||||  |||||||||| |||||||||||||||||||||||||||    
T  27554495 ttcattaaatgaaaaattaacatatacatttggaataccttttgtatgattttgttcaaaggaggaaaag 27554426  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 418 - 485
Target Start/End: Complemental strand, 27554802 - 27554734
Alignment:
Q  418 tcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 485  Q
    ||||||||| |||||||| |||| |||||| |||||| ||| |||||||||||||||||||||||||||    
T  27554802 tcattaaataaaaaattatcatatacattacgaatactttttgtatgattttgttcaaaggaggaaaag 27554734  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 27549588 - 27549634
Alignment:
Q  130 ggttaatgagattttggagtgaagaaggtttgtatttatagaccaaa 176  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||    
T  27549588 ggttaatgagattttggggtgaagaaggtttgtctttatagaccaaa 27549634  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 566 - 614
Target Start/End: Complemental strand, 27554495 - 27554447
Alignment:
Q  566 ttcattaaatgaaaaactaccatatacatttcgaataccttttgtatga 614  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||||    
T  27554495 ttcattaaatgaaaaattaacatatacatttggaataccttttgtatga 27554447  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 569 - 614
Target Start/End: Complemental strand, 27554346 - 27554301
Alignment:
Q  569 attaaatgaaaaactaccatatacatttcgaataccttttgtatga 614  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||||||    
T  27554346 attaaatgaaaaattaccaaatacatttcaaataccttttgtatga 27554301  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 485
Target Start/End: Complemental strand, 27554651 - 27554582
Alignment:
Q  417 ttcattaaatgaaaaattaccataac-attatgaatacctttcgtatgattttgttcaaaggaggaaaag 485  Q
    ||||||||||||||||||| ||||   |||  |||||||||| ||||||||||||| |||||||||||||    
T  27554651 ttcattaaatgaaaaattatcatatttatttcgaataccttttgtatgattttgtttaaaggaggaaaag 27554582  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 614
Target Start/End: Complemental strand, 27554651 - 27554603
Alignment:
Q  566 ttcattaaatgaaaaactaccatatacatttcgaataccttttgtatga 614  Q
    |||||||||||||||| || |||||  ||||||||||||||||||||||    
T  27554651 ttcattaaatgaaaaattatcatatttatttcgaataccttttgtatga 27554603  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 27644925 - 27644969
Alignment:
Q  10 gagtttgttcatctccgatgaaatttgttgttctgccattgtttc 54  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||    
T  27644925 gagtttgttcatctccgatgaaacttgttgttccaccattgtttc 27644969  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 551
Target Start/End: Original strand, 27645419 - 27645461
Alignment:
Q  508 gtgtgtgaattctttactccttaagatatttatttaatgatagt 551  Q
    |||||||||||||| |||| ||||||||||||||||||||||||    
T  27645419 gtgtgtgaattctt-actctttaagatatttatttaatgatagt 27645461  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 614
Target Start/End: Original strand, 27645314 - 27645368
Alignment:
Q  560 aagattttcattaaatgaaaaactaccatatacatttcgaataccttttgtatga 614  Q
    |||||||| ||| ||||||||| |||||||||||||  |||||||||| ||||||    
T  27645314 aagatttttattgaatgaaaaattaccatatacattatgaatacctttcgtatga 27645368  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 27549426 - 27549462
Alignment:
Q  15 tgttcatctccgatgaaatttgttgttctgccattgt 51  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  27549426 tgttcatctctgatgaaacttgttgttctgccattgt 27549462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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