View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0938-Insertion-8 (Length: 595)

Name: NF0938-Insertion-8
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0938-Insertion-8
NF0938-Insertion-8
[»] chr5 (36 HSPs)
chr5 (8-578)||(32750291-32750857)
chr5 (396-593)||(32756397-32756590)
chr5 (140-370)||(32756593-32756824)
chr5 (142-232)||(9096310-9096400)
chr5 (137-232)||(14570035-14570130)
chr5 (142-303)||(27480162-27480325)
chr5 (142-232)||(38568367-38568457)
chr5 (142-217)||(38120178-38120250)
chr5 (142-242)||(19389818-19389917)
chr5 (142-232)||(37908992-37909082)
chr5 (142-299)||(1658107-1658268)
chr5 (539-590)||(32752755-32752806)
chr5 (173-232)||(35701051-35701110)
chr5 (186-232)||(6491175-6491221)
chr5 (142-232)||(10437977-10438067)
chr5 (174-232)||(41694968-41695026)
chr5 (142-231)||(18675713-18675801)
chr5 (142-232)||(38928692-38928792)
chr5 (148-232)||(5772726-5772810)
chr5 (174-215)||(26149611-26149652)
chr5 (142-237)||(37508380-37508486)
chr5 (193-232)||(1978197-1978236)
chr5 (142-181)||(17092949-17092988)
chr5 (173-232)||(25026913-25026972)
chr5 (185-232)||(32760748-32760795)
chr5 (142-180)||(10295536-10295574)
chr5 (186-232)||(10955734-10955780)
chr5 (194-232)||(17668194-17668232)
chr5 (175-237)||(25598819-25598881)
chr5 (186-232)||(35683517-35683563)
chr5 (148-225)||(35708758-35708836)
chr5 (142-180)||(41638424-41638462)
chr5 (187-232)||(10843035-10843080)
chr5 (173-218)||(17092902-17092947)
chr5 (185-217)||(35868836-35868868)
chr5 (142-232)||(39549890-39549984)
[»] chr2 (49 HSPs)
chr2 (148-232)||(5322125-5322209)
chr2 (142-241)||(13767411-13767509)
chr2 (173-294)||(725890-726006)
chr2 (142-232)||(31550252-31550339)
chr2 (142-232)||(31899346-31899433)
chr2 (173-232)||(40357448-40357507)
chr2 (142-232)||(30312405-30312495)
chr2 (143-232)||(25292170-25292259)
chr2 (173-292)||(32243412-32243525)
chr2 (142-232)||(1725901-1726000)
chr2 (148-230)||(15803181-15803263)
chr2 (142-299)||(25960600-25960761)
chr2 (148-232)||(1364824-1364908)
chr2 (141-293)||(6711831-6711977)
chr2 (142-231)||(8555766-8555865)
chr2 (185-232)||(3038989-3039036)
chr2 (173-224)||(18780383-18780434)
chr2 (148-231)||(31082807-31082890)
chr2 (186-232)||(4003419-4003465)
chr2 (142-217)||(10165421-10165504)
chr2 (193-235)||(35812335-35812377)
chr2 (142-232)||(41100105-41100194)
chr2 (142-232)||(4041955-4042055)
chr2 (193-230)||(36030806-36030843)
chr2 (142-232)||(36567268-36567368)
chr2 (148-232)||(3737232-3737315)
chr2 (185-288)||(8410973-8411070)
chr2 (173-217)||(18826257-18826301)
chr2 (142-231)||(43334799-43334898)
chr2 (173-232)||(11515035-11515094)
chr2 (173-232)||(13018509-13018568)
chr2 (142-181)||(13765929-13765968)
chr2 (173-216)||(14008359-14008402)
chr2 (185-232)||(18018639-18018686)
chr2 (173-232)||(34757596-34757655)
chr2 (148-219)||(39913260-39913330)
chr2 (173-232)||(40211994-40212053)
chr2 (188-227)||(43100242-43100281)
chr2 (142-181)||(44137187-44137226)
chr2 (148-299)||(15555351-15555496)
chr2 (174-232)||(21626114-21626172)
chr2 (186-232)||(37194258-37194304)
chr2 (186-232)||(43572588-43572634)
chr2 (175-216)||(8990996-8991037)
chr2 (186-231)||(39819890-39819934)
chr2 (142-178)||(7786480-7786516)
chr2 (196-232)||(16519143-16519179)
chr2 (173-229)||(26905798-26905854)
chr2 (186-230)||(36870256-36870300)
[»] chr1 (50 HSPs)
chr1 (142-300)||(15463749-15463901)
chr1 (142-237)||(50476524-50476619)
chr1 (142-232)||(52073448-52073538)
chr1 (142-294)||(938241-938384)
chr1 (142-232)||(28848789-28848879)
chr1 (142-232)||(30543353-30543443)
chr1 (142-216)||(51246564-51246637)
chr1 (142-299)||(13255274-13255435)
chr1 (142-299)||(40707194-40707349)
chr1 (142-299)||(2925925-2926085)
chr1 (144-299)||(17688268-17688428)
chr1 (173-299)||(33991471-33991591)
chr1 (173-232)||(12293801-12293860)
chr1 (173-299)||(27499914-27500034)
chr1 (142-215)||(43571955-43572025)
chr1 (142-232)||(47206414-47206513)
chr1 (142-232)||(17760475-17760565)
chr1 (142-232)||(27255200-27255290)
chr1 (173-299)||(1523524-1523645)
chr1 (142-299)||(23871453-23871614)
chr1 (142-232)||(47905679-47905779)
chr1 (158-230)||(17556660-17556732)
chr1 (173-232)||(38794961-38795020)
chr1 (142-181)||(39508822-39508861)
chr1 (142-225)||(7963972-7964065)
chr1 (186-232)||(36269734-36269780)
chr1 (185-293)||(26757198-26757300)
chr1 (143-232)||(33324625-33324713)
chr1 (142-232)||(39889648-39889748)
chr1 (142-299)||(42488617-42488778)
chr1 (185-299)||(8156381-8156490)
chr1 (187-231)||(32299086-32299130)
chr1 (142-230)||(43036313-43036401)
chr1 (148-232)||(52068143-52068227)
chr1 (142-181)||(896485-896524)
chr1 (144-299)||(1688209-1688367)
chr1 (173-232)||(5584496-5584555)
chr1 (121-181)||(7401487-7401555)
chr1 (142-181)||(32299154-32299193)
chr1 (142-181)||(36886921-36886960)
chr1 (142-181)||(42162043-42162082)
chr1 (142-232)||(50247586-50247687)
chr1 (143-230)||(28773382-28773467)
chr1 (186-232)||(29092077-29092123)
chr1 (186-232)||(37649660-37649706)
chr1 (187-232)||(27102869-27102914)
chr1 (142-178)||(33854829-33854865)
chr1 (142-178)||(33926057-33926093)
chr1 (148-232)||(34154334-34154418)
chr1 (193-225)||(51303227-51303259)
[»] chr7 (40 HSPs)
chr7 (142-225)||(5968043-5968126)
chr7 (142-232)||(38505334-38505424)
chr7 (173-299)||(34652082-34652202)
chr7 (142-232)||(43188861-43188948)
chr7 (142-232)||(19644292-19644383)
chr7 (173-299)||(23620824-23620944)
chr7 (142-232)||(38137932-38138022)
chr7 (142-232)||(43348229-43348319)
chr7 (175-299)||(3658544-3658662)
chr7 (148-232)||(6746575-6746659)
chr7 (173-232)||(33406663-33406722)
chr7 (142-232)||(33872110-33872201)
chr7 (142-237)||(46745588-46745682)
chr7 (142-232)||(3571749-3571849)
chr7 (172-299)||(33113669-33113792)
chr7 (142-232)||(41002241-41002341)
chr7 (185-293)||(47276045-47276147)
chr7 (148-232)||(45940406-45940490)
chr7 (186-232)||(28437586-28437632)
chr7 (142-232)||(31891277-31891367)
chr7 (193-230)||(41471442-41471479)
chr7 (141-177)||(42471486-42471522)
chr7 (173-232)||(2826278-2826337)
chr7 (193-232)||(14676213-14676252)
chr7 (148-231)||(32429937-32430019)
chr7 (142-177)||(42220093-42220128)
chr7 (142-181)||(42620342-42620381)
chr7 (154-216)||(44720095-44720158)
chr7 (186-232)||(13697273-13697319)
chr7 (186-232)||(15748993-15749039)
chr7 (186-232)||(23466041-23466087)
chr7 (196-230)||(42854240-42854274)
chr7 (142-175)||(38235852-38235885)
chr7 (187-232)||(42253949-42253994)
chr7 (142-231)||(45510344-45510433)
chr7 (172-232)||(19644159-19644219)
chr7 (174-222)||(33810244-33810292)
chr7 (142-174)||(39670853-39670885)
chr7 (142-174)||(43665159-43665191)
chr7 (188-232)||(43741696-43741740)
[»] chr4 (40 HSPs)
chr4 (142-299)||(37756713-37756864)
chr4 (142-225)||(32948516-32948599)
chr4 (173-299)||(38317260-38317380)
chr4 (142-232)||(46176927-46177017)
chr4 (142-250)||(23708120-23708227)
chr4 (142-232)||(49936506-49936593)
chr4 (173-232)||(31530010-31530069)
chr4 (142-299)||(56504459-56504619)
chr4 (142-232)||(7182181-7182281)
chr4 (148-232)||(29114239-29114323)
chr4 (148-232)||(45823546-45823630)
chr4 (173-299)||(41363843-41363963)
chr4 (173-294)||(20533862-20533977)
chr4 (142-232)||(904188-904288)
chr4 (144-213)||(48417602-48417671)
chr4 (148-232)||(35959187-35959271)
chr4 (144-183)||(43031710-43031749)
chr4 (193-232)||(54205830-54205869)
chr4 (185-299)||(17873126-17873235)
chr4 (142-216)||(49404613-49404697)
chr4 (142-225)||(3127002-3127093)
chr4 (142-182)||(47669861-47669901)
chr4 (173-232)||(12708865-12708924)
chr4 (173-299)||(16535621-16535741)
chr4 (173-216)||(17622502-17622545)
chr4 (193-232)||(28175515-28175554)
chr4 (173-232)||(41844426-41844485)
chr4 (142-180)||(13270265-13270303)
chr4 (174-232)||(21296137-21296195)
chr4 (186-232)||(30198815-30198861)
chr4 (188-230)||(30307366-30307408)
chr4 (157-231)||(31428803-31428877)
chr4 (143-181)||(48830805-48830843)
chr4 (142-220)||(49668104-49668182)
chr4 (195-232)||(27485295-27485332)
chr4 (142-175)||(32060704-32060737)
chr4 (173-230)||(42650629-42650686)
chr4 (171-216)||(52594654-52594698)
chr4 (196-232)||(368060-368096)
chr4 (141-181)||(43793449-43793489)
[»] chr3 (48 HSPs)
chr3 (142-232)||(24588283-24588373)
chr3 (142-208)||(34306623-34306689)
chr3 (173-299)||(24242123-24242243)
chr3 (142-232)||(2420662-2420750)
chr3 (142-232)||(38515241-38515328)
chr3 (142-232)||(1132925-1133015)
chr3 (142-217)||(42583288-42583359)
chr3 (142-294)||(46312410-46312567)
chr3 (148-227)||(40118893-40118969)
chr3 (148-232)||(38639580-38639664)
chr3 (148-232)||(52620831-52620915)
chr3 (173-299)||(3043149-3043269)
chr3 (173-232)||(38526144-38526203)
chr3 (142-230)||(41961967-41962065)
chr3 (142-229)||(37674143-37674227)
chr3 (142-232)||(45555624-45555724)
chr3 (188-232)||(32858821-32858865)
chr3 (149-232)||(50535108-50535192)
chr3 (148-232)||(53664605-53664689)
chr3 (142-299)||(33982729-33982870)
chr3 (185-232)||(36796414-36796461)
chr3 (185-232)||(49683044-49683091)
chr3 (186-232)||(3537199-3537245)
chr3 (186-232)||(15499343-15499389)
chr3 (196-232)||(517685-517721)
chr3 (148-232)||(33281712-33281796)
chr3 (148-232)||(42155960-42156043)
chr3 (142-182)||(47434310-47434350)
chr3 (142-182)||(47714663-47714703)
chr3 (188-299)||(55439514-55439619)
chr3 (173-232)||(31178277-31178336)
chr3 (173-232)||(33944671-33944730)
chr3 (142-181)||(39499250-39499289)
chr3 (173-232)||(43237282-43237340)
chr3 (142-229)||(44400703-44400790)
chr3 (142-299)||(47789436-47789597)
chr3 (186-232)||(11040872-11040918)
chr3 (186-232)||(25754146-25754192)
chr3 (142-231)||(39114954-39115041)
chr3 (186-232)||(46017217-46017263)
chr3 (142-220)||(49183699-49183776)
chr3 (142-175)||(27055894-27055927)
chr3 (142-175)||(30121512-30121545)
chr3 (171-232)||(47714702-47714762)
chr3 (148-181)||(51686558-51686591)
chr3 (186-230)||(35283080-35283124)
chr3 (144-180)||(38593005-38593041)
chr3 (142-182)||(47359360-47359400)
[»] chr6 (14 HSPs)
chr6 (148-225)||(26713862-26713938)
chr6 (142-232)||(13380531-13380622)
chr6 (148-232)||(32719382-32719466)
chr6 (173-232)||(26574426-26574485)
chr6 (142-299)||(24734812-24734971)
chr6 (171-232)||(11180188-11180249)
chr6 (142-232)||(23095118-23095218)
chr6 (175-232)||(29241866-29241923)
chr6 (148-232)||(20820536-20820620)
chr6 (142-181)||(1029345-1029384)
chr6 (186-232)||(1567272-1567318)
chr6 (173-234)||(5825322-5825382)
chr6 (142-175)||(26481121-26481154)
chr6 (144-180)||(34914680-34914716)
[»] chr8 (22 HSPs)
chr8 (186-242)||(40985118-40985174)
chr8 (142-232)||(79613-79703)
chr8 (173-232)||(25033371-25033430)
chr8 (173-299)||(36906117-36906237)
chr8 (142-299)||(34272445-34272606)
chr8 (173-232)||(37659562-37659621)
chr8 (148-232)||(10605153-10605237)
chr8 (148-232)||(26772648-26772732)
chr8 (142-181)||(1942043-1942082)
chr8 (142-232)||(2474757-2474856)
chr8 (142-181)||(4734486-4734525)
chr8 (173-232)||(21173889-21173948)
chr8 (165-232)||(28517270-28517337)
chr8 (142-181)||(31297338-31297377)
chr8 (173-232)||(34304707-34304765)
chr8 (186-237)||(43733164-43733215)
chr8 (186-232)||(23932602-23932648)
chr8 (186-232)||(28169868-28169914)
chr8 (148-230)||(39405063-39405144)
chr8 (173-230)||(1839851-1839908)
chr8 (187-232)||(16024598-16024643)
chr8 (154-225)||(32158772-32158844)
[»] scaffold0036 (1 HSPs)
scaffold0036 (142-232)||(82787-82877)
[»] scaffold0028 (1 HSPs)
scaffold0028 (142-181)||(35445-35484)
[»] scaffold0991 (1 HSPs)
scaffold0991 (142-232)||(3240-3330)
[»] scaffold0136 (1 HSPs)
scaffold0136 (186-232)||(2067-2113)
[»] scaffold0002 (1 HSPs)
scaffold0002 (142-228)||(90875-90961)
[»] scaffold0717 (1 HSPs)
scaffold0717 (173-225)||(1576-1628)
[»] scaffold0128 (1 HSPs)
scaffold0128 (188-232)||(26370-26414)


Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Complemental strand, 32750857 - 32750291
Alignment:
Q  8 ctaagctcacccaaacatgtgtgaaaatgaccaccaggctaaactcaatcaggctttgtttggaagggggaaggaaggactttggagataagaaatatat 107  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32750857 ctaagctcacccaaacatgtgtgaaaatgaccagcaggctaaactcaatcaggctttgtttggaagggggaagggaggactttggagataagaaatatat 32750758  T
Q  108 agaaagagagtaattttt-agagaataataaactaagattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcc 206  Q
    ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| ||||||    
T  32750757 agaaaaagagtaattttttagagaatgataaactaagattgaatttgaaaaattcatataaacactcctaaacccttccccaataaaaatttttagttcc 32750658  T
Q  207 cccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgcttcttatc 306  Q
    |||| ||||||||||||||||||||||||||||||      ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32750657 cccacatgaggaggattttgtattatcaatataaa------attaatcccaaaagccctctcctctcaatttattctatttcttccacatgcttcttatc 32750564  T
Q  307 aaaaccttaacctatgattttatctcagcttcacatttttgtcaaatgactattatttatttcttccttgatatgtcatgtgctatataatacaaagccc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32750563 aaaaccttaacctatgattttatctcagcttcacatttttgtcaaatgactattatttatttcttccttgatatgtcatgtgctatataatacaaagccc 32750464  T
Q  407 atcctcacaaaaccatgggtgcaagcacatttaaaatctta--ctatgnnnnnnnnnnaggcaaagctcgttacttacaaacccattaatttgtttttga 504  Q
    |||||||||||||||||||||||||||||||||||||||||   | |           ||||||||||||||||||||||||||||||||||||||||||    
T  32750463 atcctcacaaaaccatgggtgcaagcacatttaaaatcttatgttttttttttattttaggcaaagctcgttacttacaaacccattaatttgtttttga 32750364  T
Q  505 caaattaaaaccactactcagaatac-nnnnnnnaatagaaaataaattcataacaatcaaaatatttctacatt 578  Q
    |  |||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  32750363 c--attaaaaccactactcagaatactttttttttatagaaaataaattcataacaatcaaaatatttctacatt 32750291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 396 - 593
Target Start/End: Complemental strand, 32756590 - 32756397
Alignment:
Q  396 atacaaagcccatcctcacaaaaccatgggtgcaagcacatttaaaatcttactatgnnnnnnnnnnaggcaaagctcgttacttacaaacccattaatt 495  Q
    |||||||| || ||||||| ||||||  |||||||||||||||||||||||  | ||          ||||||||||||||||||||||||| |||||||    
T  32756590 atacaaagaccgtcctcactaaaccaccggtgcaagcacatttaaaatctt--tttgcttattttttaggcaaagctcgttacttacaaaccaattaatt 32756493  T
Q  496 tgtttttgacaaattaaaaccactactcagaatacnnnnnnnaatagaaaataaattcataacaatcaaaatatttctacattcacatgctgcagagt 593  Q
    |||||| |||| | ||||||||||| | ||||||         |||||||||||| ||| |||||||||||||||||| |||||||||||||||||||    
T  32756492 tgttttggacagactaaaaccactaattagaatattttttt--atagaaaataaaatcaaaacaatcaaaatatttcttcattcacatgctgcagagt 32756397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 140 - 370
Target Start/End: Complemental strand, 32756824 - 32756593
Alignment:
Q  140 taagattgaatttgaaaaattcatataaacactccaaaaccctttcccaa-taaaatttttgagttcccccaaatgaggaggattttg---tattatcaa 235  Q
    ||||||| ||||| |||||||||||||| | |||||||| | || ||||| || ||||||||| |||||| | | ||||||  |||||   |||||| |     
T  32756824 taagatttaatttaaaaaattcatataatccctccaaaatc-ttccccaactacaatttttgacttcccc-acacgaggagtgttttgcattattattat 32756727  T
Q  236 tataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgcttcttatcaaaaccttaacctatgattttatctcagc 335  Q
    |||||||| ||||||||| || ||| |||  || || ||| |  ||||||||||||||| | ||  | | ||||||||||||||||||||||||||||||    
T  32756726 tataaataaaaaattaactcctaaaatcccttcatcccaagtc-ttctatttcttccacttactcttaaacaaaaccttaacctatgattttatctcagc 32756628  T
Q  336 ttcacatttttgtcaaatgactattatttatttct 370  Q
    ||| |||||| |||||||||||||||||| |||||    
T  32756627 ttcgcattttagtcaaatgactattatttttttct 32756593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 9096400 - 9096310
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||| ||||||||||||| |||||||| |||   |||||| |||| |||||||||||||||| |||| |||||||||||||    
T  9096400 agattgaatttgaagaattcatataaaccctccaaaatcctcctccaatacaattgttgagttcccccaaattaggaagattttgtattat 9096310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 14570035 - 14570130
Alignment:
Q  137 aactaagattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||| ||||| |||||||| ||||||||||||| ||||||||||||   |||||| ||||||| ||||| |||||||||||||| ||| |||||||    
T  14570035 aacttagattaaatttgaagaattcatataaaccctccaaaaccctactccaatataattttttagttctcccaaatgaggagggtttagtattat 14570130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 142 - 303
Target Start/End: Original strand, 27480162 - 27480325
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca----------aaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| |||||          |||||||  ||||||| ||||||||||||||| ||||||||||||||||| |||      
T  27480162 agattgaatttgaaaaattcatataaaccctccataaccccctaaaaccctcccccaatacaatttttgagttccctcaaatgaggaggattttttat-- 27480259  T
Q  232 tcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgcttctt 303  Q
          ||| || |||||||||| | |||| ||||||||| |||| | ||||||||||||||| ||||||||    
T  27480260 ------taagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgcttctt 27480325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 38568367 - 38568457
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||| ||||||||||||| | ||||||||||   |||||| ||||||| |||||||||||||||||||| ||| |||||||    
T  38568367 agattaaatttgaagaattcatataaaccccccaaaaccctcctccaatataattttttagttcccccaaatgaggagggtttagtattat 38568457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 38120178 - 38120250
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgagg 217  Q
    ||||| |||||||||||||||||||||| ||||| |||||   ||||||| |||||||||||||||||||||||||    
T  38120178 agattaaatttgaaaaattcatataaaccctccataaccc---cccaatacaatttttgagttcccccaaatgagg 38120250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 19389818 - 19389917
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaa 241  Q
    ||||| |||||||| ||||||| ||||| |||||||| |||   |||||| ||||||| |||||||| ||||||||||||||||||||||| || |||||    
T  19389818 agattaaatttgaagaattcatgtaaaccctccaaaatcctcctccaatacaattttttagttcccc-aaatgaggaggattttgtattatgaagataaa 19389916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 37909082 - 37908992
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||| ||||||||||||| ||||||||||||   |||||| || ||||||||| |||| ||| |||  |||||||||||||    
T  37909082 agattgaatttgaagaattcatataaaccctccaaaaccctcctccaatacaacttttgagtttccccgaattaggttgattttgtattat 37908992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 299
Target Start/End: Complemental strand, 1658268 - 1658107
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaacc----------ctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| ||||| ||||          ||  ||||||| ||||||||| ||||||||||||| ||||||||| |||      
T  1658268 agattgaatttgaaaaattcatataaaccctccataacctccaaaaatcctcccccaatacaatttttgaattcccccaaatgaagaggattttttat-- 1658171  T
Q  232 tcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
        ||| | || |||||||||| | |||||||||||||| |||| | ||||||||||||||| ||||    
T  1658170 ----tatgactaaaaaattaacctccaaagtcctctcctcccaatgtcttctatttcttccacttgct 1658107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 539 - 590
Target Start/End: Complemental strand, 32752806 - 32752755
Alignment:
Q  539 atagaaaataaattcataacaatcaaaatatttctacattcacatgctgcag 590  Q
    |||||||||||| ||| |||||||||||||||||| ||||||||||||||||    
T  32752806 atagaaaataaaatcaaaacaatcaaaatatttcttcattcacatgctgcag 32752755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 35701110 - 35701051
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  35701110 ccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggattttttattat 35701051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 6491221 - 6491175
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||    
T  6491221 ccaatacaatttttgagttcccccaaatgaggaagattttgtattat 6491175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 10438067 - 10437977
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||| |||| |||| ||| ||||||||||||   |||||| || |||| |||||| | |||||||||||||||||||||||    
T  10438067 agattaaatttgaagaattgatattaaccctccaaaaccctcctccaatacaactttttagttcctctaaatgaggaggattttgtattat 10437977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 41695026 - 41694968
Alignment:
Q  174 caaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||  ||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  41695026 caaaaccctcccccaatacaatttttgagttcccccaaatgagggggattttttattat 41694968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 18675713 - 18675801
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    ||||| |||| ||| ||||||||||||| |||||||||||||  |||||| ||| ||| |||| ||||||||||| ||||||| ||||||    
T  18675713 agattaaattcgaagaattcatataaaccctccaaaacccttctccaatataatcttttagtt-ccccaaatgagaaggatttagtatta 18675801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 38928692 - 38928792
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca----------aaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||| |||||||||||||||||||||||||||          |||||||  | ||||| ||||||||||||||||||||||||| ||||||| |||||    
T  38928692 agattggatttgaaaaattcatataaacactccataaccccccaaaaccctcccgcaatacaatttttgagttcccccaaatgagggggattttttatta 38928791  T
Q  232 t 232  Q
    |    
T  38928792 t 38928792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 5772726 - 5772810
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||| ||| ||| ||||||||||||   |||||| ||||||| | |||| ||||||||||||| |||||||||||    
T  5772726 aatttgaagaattcttattaaccctccaaaaccctcctccaatacaattttttaattcctccaaatgaggagggttttgtattat 5772810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 26149652 - 26149611
Alignment:
Q  174 caaaaccctttcccaataaaatttttgagttcccccaaatga 215  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  26149652 caaaaccctctcccaatacaatttttgagttcccccaaatga 26149611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 37508380 - 37508486
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcc-----------aaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    |||||||||||||||||||||||||||| ||||           ||||||||  ||||||| |||||||||||||| |||||||||| | ||||| ||||    
T  37508380 agattgaatttgaaaaattcatataaaccctccataaccccccaaaaaccctcccccaatacaatttttgagttcctccaaatgaggggaattttttatt 37508479  T
Q  231 atcaata 237  Q
    || ||||    
T  37508480 atgaata 37508486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 1978236 - 1978197
Alignment:
Q  193 aatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  1978236 aatttttgagtttccccaaatgagggggattttgtattat 1978197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 17092988 - 17092949
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  17092988 agattgaatttgaaaaattcatataaaccctccataaccc 17092949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 25026972 - 25026913
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||| ||||||| ||||||| ||||| |||||||||||  |||||| ||||||    
T  25026972 ccaaaacccttccccaatacaattttttagttctcccaaatgagggagattttttattat 25026913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 32760795 - 32760748
Alignment:
Q  185 cccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||| |||||||||||||||||||||||||  |||||| ||||||    
T  32760795 cccaatacaatttttgagttcccccaaatgagggagattttttattat 32760748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 10295574 - 10295536
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaacc 180  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  10295574 agattgaatttgaaaaattcatataaaccctccataacc 10295536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 10955734 - 10955780
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||| ||| |||||||||||||||||||| |||||||||||    
T  10955734 ccaatacaatcttttagttcccccaaatgaggagggttttgtattat 10955780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 17668194 - 17668232
Alignment:
Q  194 atttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  17668194 atttttgagttcccacaaatgaggaggatttagtattat 17668232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 25598819 - 25598881
Alignment:
Q  175 aaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaata 237  Q
    ||||| ||| ||||||| ||||||| ||||||||||||| ||||||| ||| |||||| ||||    
T  25598819 aaaactcttccccaatataatttttaagttcccccaaataaggaggaatttttattatgaata 25598881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 35683517 - 35683563
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  35683517 ccaatacaattttttagttcctccaaatgaggagggttttgtattat 35683563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 35708758 - 35708836
Alignment:
Q  148 aatttgaaaaattcatataaacactcc-aaaaccctttcccaataaaatttttgagttcccccaaatgaggaggatttt 225  Q
    |||||||| |||||||||||||  ||| ||||||||   ||| || ||||||| ||||||| |||||||||||||||||    
T  35708758 aatttgaagaattcatataaaccttcccaaaaccctcctccagtacaattttttagttccctcaaatgaggaggatttt 35708836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 41638462 - 41638424
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaacc 180  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  41638462 agattgaatttgaaaaattcatataaaccctccataacc 41638424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 10843080 - 10843035
Alignment:
Q  187 caataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  10843080 caatacaattttttagttcctccaaatgaggagggttttgtattat 10843035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 17092947 - 17092902
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgagga 218  Q
    ||||||||||  ||||||| |||||||||||| |||||||||||||    
T  17092947 ccaaaaccctcccccaatacaatttttgagtttccccaaatgagga 17092902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 35868868 - 35868836
Alignment:
Q  185 cccaataaaatttttgagttcccccaaatgagg 217  Q
    ||||||| |||||||||||||||||||||||||    
T  35868868 cccaatataatttttgagttcccccaaatgagg 35868836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 39549890 - 39549984
Alignment:
Q  142 agattgaatttgaaaaattcatataaaca--ctccaaaaccctttcccaataaaa--tttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| ||||||||||||||||||||| |  |||||||||| ||| | |||| ||  ||||| |||| || ||||| |||||| |||||||||||    
T  39549890 agattaaatttgaaaaattcatataaaaatcctccaaaaccattttctaatacaattttttttagttacctcaaataaggagggttttgtattat 39549984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 49)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 5322125 - 5322209
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||||||||||| |||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||    
T  5322125 aatttgaataattcatataaaccctccaaaacccttttccaatacagtttttgagttcccccaaatgaggaggattttgtattat 5322209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 142 - 241
Target Start/End: Complemental strand, 13767509 - 13767411
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaa 241  Q
    |||||||||||||||||||||||||||| | |||||| |||  ||||||| ||||||| ||||||||||||||||  | |||||||||||| ||||||||    
T  13767509 agattgaatttgaaaaattcatataaacccgccaaaatcctc-cccaatacaattttttagttcccccaaatgagtggaattttgtattatgaatataaa 13767411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 726006 - 725890
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    ||||||||||  |||||||||||||||||||||| ||||||||||  |||||| |||||| ||||     | |||||||||| | |||| ||||||||      
T  726006 ccaaaaccctcccccaataaaatttttgagttcctccaaatgagggagattttttattatgaata-----aaaaaattaacctctaaagccctctccttc 725912  T
Q  273 caatttattctatttcttccac 294  Q
    |||||| |||||||||||||||    
T  725911 caatttcttctatttcttccac 725890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 31550252 - 31550339
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||||||||||||||||| ||||| |||||   ||||||| |||||||||||||||| |||||||| | ||||| ||||||    
T  31550252 agattggatttgaaaaattcatataaaccctccataaccc---cccaatacaatttttgagttcccctaaatgaggggaattttttattat 31550339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 31899346 - 31899433
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||||||||||||||||| ||||| || ||   ||||||| ||||||||||||||||||||| ||| | ||||| ||||||    
T  31899346 agattgaatttgaaaaattcatataaaccctccataatcc---cccaatacaatttttgagttcccccaaattaggggaattttttattat 31899433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 40357507 - 40357448
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  40357507 ccaaaaccctctcccaatacaatttttgagttcccccaaatgagggggattttttattat 40357448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 30312405 - 30312495
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| |||||||||| |||||||||| | ||||||||||    ||||| ||||||| ||||||||||||||||| ||||||| ||||||    
T  30312405 agattggatttgaaaaaatcatataaaccccccaaaaccctccttcaatacaattttttagttcccccaaatgagggggattttttattat 30312495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 25292259 - 25292170
Alignment:
Q  143 gattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||| ||||||||||||||||||||||  ||| ||| |||   |||||| ||||||||| || ||||| |||||||||||||||||||||    
T  25292259 gattaaatttgaaaaattcatataaaccttccgaaatcctactccaatataatttttgaatttccccatatgaggaggattttgtattat 25292170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 173 - 292
Target Start/End: Complemental strand, 32243525 - 32243412
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||| |||||| |||      ||| | || |||||||||| | |||| |||||||||     
T  32243525 ccaaaaccctcccccaatacaatttttgagttcccccaaatgaggatgattttttat------tatgattaaaaaattaacctccaaagccctctcctcc 32243432  T
Q  273 caatttattctatttcttcc 292  Q
    |||| | |||||||||||||    
T  32243431 caatgtcttctatttcttcc 32243412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 1726000 - 1725901
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactc---------caaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||||||||||||||||| |||         |||||||||  ||||||| |||||||||||||||||| |||||| ||||||| ||||||    
T  1726000 agattgaatttgaaaaattcatataaaccctctataacccccaaaaccctcccccaatacaatttttgagttcccccagatgagggggattttttattat 1725901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 15803263 - 15803181
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    |||||||| ||||||||||||| |||||||| |||   |||||| ||||||| ||||||||||| |||||||| |||| ||||    
T  15803263 aatttgaagaattcatataaaccctccaaaatcctcctccaatacaattttttagttcccccaactgaggagggttttatatt 15803181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 25960600 - 25960761
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca----------aaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| |||||          |||||||  ||| ||| |||||||||||||||||||||||||  |||||| |||      
T  25960600 agattgaatttgaaaaattcatataaaccctccataagccctcaaaaccctcccccgatacaatttttgagttcccccaaatgagggagattttctat-- 25960697  T
Q  232 tcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
        ||| | || |||||||||| | |||| |||||||| ||||| | ||||||||||||||| ||||    
T  25960698 ----tatgagtaaaaaattaacctccaaagccctctcctttcaatgtcttctatttcttccacttgct 25960761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 1364908 - 1364824
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||| ||| ||| | ||||||||||   |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  1364908 aatttgaagaattcttattaaccccccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattat 1364824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 293
Target Start/End: Original strand, 6711831 - 6711977
Alignment:
Q  141 aagattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataa 240  Q
    |||||||||||| |||||||| ||||||  ||||| ||| |   ||||||| |||| ||||||||||| |||||||  ||||||| | ||||   ||| |    
T  6711831 aagattgaatttaaaaaattcttataaattctccataacgc---cccaatacaattgttgagttcccctaaatgagagggatttttttttat---tatga 6711924  T
Q  241 atataaaattaaccccaaaagtcctctcctctcaatttattctatttcttcca 293  Q
     || |||||||||  | |||| |||||||||||||| | ||||||||||||||    
T  6711925 gtaaaaaattaacttccaaagccctctcctctcaatgtcttctatttcttcca 6711977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 8555766 - 8555865
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactc----------caaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| |||          |||||||||  ||||||| ||||||| ||||||||||||||||| ||||||| |||||    
T  8555766 agattgaatttgaaaaattcatataaaccctctataaccccccaaaaccctcccccaatacaattttttagttcccccaaatgagggggattttttatta 8555865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 3038989 - 3039036
Alignment:
Q  185 cccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  3038989 cccaatacaatttttgagttcccccaaatgagggggattttttattat 3039036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 18780434 - 18780383
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattt 224  Q
    |||||||||| |||||||| ||||||||||||||||||||||| | ||||||    
T  18780434 ccaaaaccctctcccaatacaatttttgagttcccccaaatgaaggggattt 18780383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 31082890 - 31082807
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||| ||||||||||||| | ||||||||||   |||||| ||| ||| |||||||||||| ||||||| ||| ||||||    
T  31082890 aatttgaagaattcatataaaccccccaaaaccctcctccaatacaatattttagttcccccaaacgaggagggtttagtatta 31082807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 4003465 - 4003419
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| |||||||||||||||||||||||||||  |||||||||||    
T  4003465 ccaatacaatttttgagttcccccaaatgaggagagttttgtattat 4003419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 10165504 - 10165421
Alignment:
Q  142 agattgaatttgaaaaattcatataaac--------actccaaaaccctttcccaataaaatttttgagttcccccaaatgagg 217  Q
    ||||||||||||||||||||||||||||        || ||||||||||  ||||||| ||||||| |||||||||||||||||    
T  10165504 agattgaatttgaaaaattcatataaaccctccataaccccaaaaccctcccccaatacaattttttagttcccccaaatgagg 10165421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 35812377 - 35812335
Alignment:
Q  193 aatttttgagttcccccaaatgaggaggattttgtattatcaa 235  Q
    ||||||||||||||||||||| ||| |||||||||||||||||    
T  35812377 aatttttgagttcccccaaataagggggattttgtattatcaa 35812335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 41100105 - 41100194
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| ||||| | ||||||||||||||  ||||||| |||   |||||| ||||||| |||| ||||||||||||||| |||||||||||    
T  41100105 agattaaatttaagaaattcatataaaccatccaaaatcctcctccaatacaattttttagtt-ccccaaatgaggagggttttgtattat 41100194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 4042055 - 4041955
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca----------aaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| |||||          |||||||  ||||||| ||||||||||||||  ||||||||| ||||||| |||||    
T  4042055 agattgaatttgaaaaattcatataaaccctccataaccccccaaaaccctcccccaatacaatttttgagttccttcaaatgagggggattttttatta 4041956  T
Q  232 t 232  Q
    |    
T  4041955 t 4041955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 36030843 - 36030806
Alignment:
Q  193 aatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  36030843 aatttttgagttcccccaaatgaggagaattttgtatt 36030806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 36567268 - 36567368
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcc----------aaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| ||||          ||||| ||  ||||||| |||||||||||||||||||||||||  |||||| |||||    
T  36567268 agattgaatttgaaaaattcatataaaccctccataaccccctaaaactctcccccaatacaatttttgagttcccccaaatgagggagattttttatta 36567367  T
Q  232 t 232  Q
    |    
T  36567368 t 36567368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 3737232 - 3737315
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| |||| || ||||||||| ||||| |||| | |||| |||||||||||| |  |||||||||| |||||||||||||    
T  3737232 aatttgaagaatttatgtaaacactctaaaactcttttctaatacaatttttgagtt-cttcaaatgaggatgattttgtattat 3737315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 8410973 - 8411070
Alignment:
Q  185 cccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattcta 284  Q
    ||||||| ||||||||||||||||||||||||| | ||||| |||      ||||| || |||||||||| | |||| ||||||||| |||| | |||||    
T  8410973 cccaatacaatttttgagttcccccaaatgaggggaattttttat------tataagtaaaaaattaacctccaaagccctctcctcccaatgtcttcta 8411066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 18826257 - 18826301
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgagg 217  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||    
T  18826257 ccaaaaccctcccccaatacaatttttgagttcccccaaatgagg 18826301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 43334898 - 43334799
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactc----------caaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| |||          |||||||||  ||||||| |||||||||||||||||||| ||||  |||||| |||||    
T  43334898 agattgaatttgaaaaattcatataaaccctccataacctctcaaaaccctcccccaatacaatttttgagttcccccaaaagagggagattttttatta 43334799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 11515094 - 11515035
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||   |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  11515094 ccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattat 11515035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 13018509 - 13018568
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||  ||||||| | ||||| |||||| ||||||||||||| |||||||||||    
T  13018509 ccaaaaccctcccccaatacatttttttagttcctccaaatgaggagggttttgtattat 13018568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 13765929 - 13765968
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  13765929 agattgaatttgaaaaattcatataaaccctccacaaccc 13765968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 14008359 - 14008402
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgag 216  Q
    |||||||||| || ||||| ||||||||||||||||||||||||    
T  14008359 ccaaaaccctctctcaatataatttttgagttcccccaaatgag 14008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 18018639 - 18018686
Alignment:
Q  185 cccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||| |||||||||||||||||||||||||  |||||| ||||||    
T  18018639 cccaatacaatttttgagttcccccaaatgagggagattttttattat 18018686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 34757655 - 34757596
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||   |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  34757655 ccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattat 34757596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 39913330 - 39913260
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggag 219  Q
    ||||| |||||||||| ||||| |||||||| |||   |||||| |||||||||||| ||||||||||||||    
T  39913330 aatttaaaaaattcatgtaaaccctccaaaatcctcctccaatataatttttgagtt-ccccaaatgaggag 39913260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 40212053 - 40211994
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||   |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  40212053 ccaaaaccctcatccaatacaattttttagttcctccaaatgaggagggttttgtattat 40211994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 43100242 - 43100281
Alignment:
Q  188 aataaaatttttgagttcccccaaatgaggaggattttgt 227  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  43100242 aataaaatttttgagttccaccaaatgagaaggattttgt 43100281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 44137226 - 44137187
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  44137226 agattgaatttgaaaaattcatataaaccctccataaccc 44137187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 299
Target Start/End: Original strand, 15555351 - 15555496
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttc-ccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataa 246  Q
    |||||||| ||||| ||| ||| ||| ||||||||  | |||||| ||||||| |||||| ||||||||| ||| ||||||||||| || |       ||    
T  15555351 aatttgaagaattcttattaaccctcaaaaaccctcactccaatacaattttttagttcctccaaatgagaagggttttgtattatgaaga-------aa 15555443  T
Q  247 aattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
    |||||||||| |||| ||||  ||| || ||| ||||||||||||||| ||||    
T  15555444 aattaacccccaaagccctcctctcccattttcttctatttcttccacttgct 15555496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 21626172 - 21626114
Alignment:
Q  174 caaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||  |||||| || |||| |||||||||||||||||| | |||||||||||    
T  21626172 caaaacccttctccaatacaactttttagttcccccaaatgaggatggttttgtattat 21626114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 37194304 - 37194258
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  37194304 ccaatacaattttttagttcctccaaatgaggagggttttgtattat 37194258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 43572588 - 43572634
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  43572588 ccaatacaattttttagttcctccaaatgaggagggttttgtattat 43572634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 8990996 - 8991037
Alignment:
Q  175 aaaaccctttcccaataaaatttttgagttcccccaaatgag 216  Q
    ||||||||  ||||||| ||||||||||||||||||||||||    
T  8990996 aaaaccctcccccaatacaatttttgagttcccccaaatgag 8991037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 39819934 - 39819890
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||| ||||||| |||||||| ||||||||||||||||||||||    
T  39819934 ccaatacaattttttagttcccc-aaatgaggaggattttgtatta 39819890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 7786480 - 7786516
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaa 178  Q
    |||||||||||||||||||||||||||| || |||||    
T  7786480 agattgaatttgaaaaattcatataaactctgcaaaa 7786516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 16519143 - 16519179
Alignment:
Q  196 ttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||| |||| |||||||||||||||||||||||||||    
T  16519143 tttttagtttccccaaatgaggaggattttgtattat 16519179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 26905854 - 26905798
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtat 229  Q
    ||||||||||   |||||| ||||||| |||||| ||||||||||||| ||||||||    
T  26905854 ccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtat 26905798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 36870300 - 36870256
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    |||||| ||||||| |||||||||||||||||||| |||| ||||    
T  36870300 ccaatacaattttttagttcccccaaatgaggagggttttctatt 36870256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 50)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 142 - 300
Target Start/End: Complemental strand, 15463901 - 15463749
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaa 241  Q
    |||||||||||||||||||||||||||| ||||| ||||||  ||||||| ||||||| ||||||||||||||||| ||||||| |||      |||||     
T  15463901 agattgaatttgaaaaattcatataaaccctccataaccctcccccaatacaatttttcagttcccccaaatgagggggattttttat------tataag 15463808  T
Q  242 tataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgctt 300  Q
    || |||||||||| | |||| ||||||||| ||||   ||||||||||||||| |||||    
T  15463807 taaaaaattaacctccaaagccctctcctcccaatgacttctatttcttccacttgctt 15463749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 50476619 - 50476524
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaata 237  Q
    |||||||| || |||||||||||||||| ||| ||||||||   |||||| ||||||||||||||| ||||||||| |||||||||||||| ||||    
T  50476619 agattgaaattaaaaaattcatataaaccctcgaaaaccctcctccaatacaatttttgagttccctcaaatgagggggattttgtattatgaata 50476524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 52073448 - 52073538
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||||||||||| ||||| ||||||||||||   | | || |||||||||||||||||||||||||||| ||||| |||||    
T  52073448 agattgaatttgaaaaattcatctaaaccctccaaaaccctcctctagtacaatttttgagttcccccaaatgaggagggttttgaattat 52073538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 142 - 294
Target Start/End: Original strand, 938241 - 938384
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaa 241  Q
    ||||||||||||||||| |||||||||| ||||| |||||   ||||||| ||||||||||||||||||| |||||  |||||| |||      ||| |     
T  938241 agattgaatttgaaaaaatcatataaaccctccataaccc---cccaatataatttttgagttcccccaattgagggagattttttat------tatgag 938331  T
Q  242 tataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccac 294  Q
    || |||||||||| | |||  |||||||||||||| | |||||||||||||||    
T  938332 taaaaaattaacctccaaaaccctctcctctcaatatcttctatttcttccac 938384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 28848789 - 28848879
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||| ||||||| |||||  |||||||||||   |||||| |||||||||||||||||||||||||||| |||||| ||||    
T  28848789 agattaaatttgaagaattcatgtaaaccatccaaaaccctcctccaatacaatttttgagttcccccaaatgaggagggttttgtgttat 28848879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 30543353 - 30543443
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||| ||||||| ||||| ||||||||||||    ||||| |||||||||||||||||| ||||||| |||||||||||||    
T  30543353 agattaaatttgaagaattcatgtaaaccctccaaaaccctccagcaatacaatttttgagttcccccacatgaggaagattttgtattat 30543443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 51246564 - 51246637
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgag 216  Q
    |||||||||||||||||||||||||||| || |||||||||   |||||| ||||||||||||||||||||||||    
T  51246564 agattgaatttgaaaaattcatataaaccct-caaaaccctcctccaatacaatttttgagttcccccaaatgag 51246637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 142 - 299
Target Start/End: Complemental strand, 13255435 - 13255274
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactc----------caaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| |||          ||||||||| ||||| || ||||||||||||||||||||||||| ||||||| |||      
T  13255435 agattgaatttgaaaaattcatataaaccctctataaccccccaaaaccctctcccactacaatttttgagttcccccaaatgagggggattttttat-- 13255338  T
Q  232 tcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
        ||| | || |||||||||| | |||| ||||||||| |||| | ||||||||||||||| ||||    
T  13255337 ----tatgagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgct 13255274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 40707194 - 40707349
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaa--ccctttcccaataaaatttttgagttcccccaaatgaggagga-ttttgtattatcaatat 238  Q
    |||||||||||||||||||||||||||| ||||| ||  |||   ||||||| ||||||||||||||||||||||||  ||| |||| |||||| | ||     
T  40707194 agattgaatttgaaaaattcatataaaccctccataacccccccccccaatacaatttttgagttcccccaaatgagagggatttttttattatgagta- 40707292  T
Q  239 aaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
        | |||||||||| | |||| ||||||||| |||| | ||||||||||||||| ||||    
T  40707293 ----aaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgct 40707349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 2925925 - 2926085
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc---------tttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||||||||||||||||| ||||| |||||         || ||||||| ||||||||||||||||||||||||| ||||||| |||       
T  2925925 agattaaatttgaaaaattcatataaaccctccataacccctaaaacatttccccaatacaatttttgagttcccccaaatgagggggattttttat--- 2926021  T
Q  233 caatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
       ||||| || |||||||||| | |||| ||||||||| |||| | |||||||| |||||| ||||    
T  2926022 ---tataagtaaaaaattaacctccaaagccctctcctcccaatgtcttctattttttccacttgct 2926085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 144 - 299
Target Start/End: Complemental strand, 17688428 - 17688268
Alignment:
Q  144 attgaatttgaaaaattcatataaacactccaaaaccc---------tttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatca 234  Q
    |||||||||||||||||||||||||| ||||| |||||         |  ||||||| |||||||||||||||||||||||||  |||||| |||||| |    
T  17688428 attgaatttgaaaaattcatataaaccctccataacccccaaaactctcccccaatacaatttttgagttcccccaaatgagggagattttttattatga 17688329  T
Q  235 atataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
     || ||    |||||||||| | |||| ||||||||| |||| | ||||||||||||||| ||||    
T  17688328 gtaaaa----aaaattaacctccaaagccctctcctcccaatgttttctatttcttccacttgct 17688268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 173 - 299
Target Start/End: Complemental strand, 33991591 - 33991471
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||| ||||||| |||      ||| | || |||||||||| | |||| |||||||||     
T  33991591 ccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggattttttat------tatgagtaaaaaattaacctccaaagccctctcctcc 33991498  T
Q  273 caatttattctatttcttccacatgct 299  Q
    |||| | ||||||||||||||| ||||    
T  33991497 caatgtcttctatttcttccacttgct 33991471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 12293860 - 12293801
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  12293860 ccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggattttttattat 12293801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 299
Target Start/End: Complemental strand, 27500034 - 27499914
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    ||||||||||  ||| ||| ||||||||||||||||||||||||| ||||||| |||      ||| | || |||||||||| | |||| |||||||||     
T  27500034 ccaaaaccctcccccgatacaatttttgagttcccccaaatgagggggattttttat------tatgagtaaaaaattaacctccaaagccctctcctcc 27499941  T
Q  273 caatttattctatttcttccacatgct 299  Q
    |||| | ||||||||||||||| ||||    
T  27499940 caatgtcttctatttcttccacttgct 27499914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 43571955 - 43572025
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatga 215  Q
    |||||||||||||||||||||||||||  ||||| |||||   ||||||| ||| |||||||||||||||||||    
T  43571955 agattgaatttgaaaaattcatataaatcctccataaccc---cccaatacaatatttgagttcccccaaatga 43572025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 47206414 - 47206513
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc---------tttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||||||||||||||||| ||||| |||||         |  ||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  47206414 agattgaatttgaaaaattcatataaaccctccataacccccaaaatcttcccccaatacaatttttgagttcccccaaatgagggggattttttattat 47206513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 17760475 - 17760565
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||| ||||| ||| ||| |||||||||||    |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  17760475 agattaaatttgaagaattcttattaaccctccaaaacccccctccaatacaattttttagttcctccaaatgaggagggttttgtattat 17760565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 27255290 - 27255200
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||||||||| ||| ||| ||||||||||||  ||| ||| | ||||| ||||||  |||||||||||| |||||||||||    
T  27255290 agattaaatttgaaaaattcttattaaccctccaaaaccctcccccgatacatttttttagttccttcaaatgaggagggttttgtattat 27255200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 299
Target Start/End: Complemental strand, 1523645 - 1523524
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    |||||||||| |||||||| |||||||||||||||||||| |||| ||||||  | ||||   ||| | || |||||||||| | | || |||||||||     
T  1523645 ccaaaaccctctcccaatataatttttgagttcccccaaacgagggggattt--ttttat---tatgagtaaaaaattaacctccatagccctctcctcc 1523551  T
Q  273 caatttattctatttcttccacatgct 299  Q
    |||| | ||||||||||||||| ||||    
T  1523550 caatgtcttctatttcttccacctgct 1523524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 23871453 - 23871614
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcc----------aaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| ||||          ||||||||   |||||| |||||||||||||||||||||||||  |||||| |||      
T  23871453 agattgaatttgaaaaattcatataaaccctccgtaaccccccaaaaccctccgccaatacaatttttgagttcccccaaatgagggagattttttat-- 23871550  T
Q  232 tcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
        ||| | || |||||||||  | |||| |||||||||||||| | ||||||||||||||| ||||    
T  23871551 ----tatgagtaaaaaattaacttccaaagccctctcctctcaatgtcttctatttcttccacttgct 23871614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 47905679 - 47905779
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca----------aaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| |||||          |||||||  ||||||| ||||||||||||||||||||||||| | ||||| |||||    
T  47905679 agattgaatttgaaaaattcatataaaccctccataacccccaaaaaccctcccccaatacaatttttgagttcccccaaatgaggggaattttttatta 47905778  T
Q  232 t 232  Q
    |    
T  47905779 t 47905779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 17556732 - 17556660
Alignment:
Q  158 attcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    |||||||||||| | ||||||||||   |||||| ||||||| |||||||||||||||||||| |||| ||||    
T  17556732 attcatataaaccccccaaaaccctcctccaatagaattttttagttcccccaaatgaggagggttttatatt 17556660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 38795020 - 38794961
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||  ||||||||||||||  ||||||||||||||||| ||||||| ||||||    
T  38795020 ccaaaaccctcccccaataaaattttgaagttcccccaaatgagggggattttttattat 38794961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 39508861 - 39508822
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  39508861 agattgaatttgaaaaattcatataaactctccaaaaccc 39508822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 7964065 - 7963972
Alignment:
Q  142 agattgaatttgaaaaattcatataaacact----------ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggatttt 225  Q
    |||||||||||||||||||||||||||| ||          ||||||||||  ||||||| |||||||||||||| |||||||||| |||||||    
T  7964065 agattgaatttgaaaaattcatataaacgcttcataaccccccaaaaccctcccccaatacaatttttgagttcctccaaatgagggggatttt 7963972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 36269780 - 36269734
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||    
T  36269780 ccaatacaattttttagttcccccaaatgaggagggttttgtattat 36269734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 26757198 - 26757300
Alignment:
Q  185 cccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattcta 284  Q
    ||||||| |||||||||||| |||||||||||| ||||||| |||      ||| | || |||||||||| | |||| ||||||||| |||| | |||||    
T  26757198 cccaatacaatttttgagttaccccaaatgagggggattttttat------tatgagtaaaaaattaacctccaaagccctctcctcccaatatcttcta 26757291  T
Q  285 tttcttcca 293  Q
    |||||||||    
T  26757292 tttcttcca 26757300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 33324713 - 33324625
Alignment:
Q  143 gattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||| |||||||| ||||||||||||| ||| ||||||||   | |||| ||||||| ||||||| |||||||||||| ||| |||||||    
T  33324713 gattaaatttgaagaattcatataaaccctctaaaaccctcctctaatacaattttt-agttccctcaaatgaggagggtttagtattat 33324625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 39889648 - 39889748
Alignment:
Q  142 agattgaatttgaaaaattcatataaacact----------ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| ||          ||||||||||  ||||||| ||||||||||||||||||||| |||  |||||| |||||    
T  39889648 agattgaatttgaaaaattcatataaaccctccataaccccccaaaaccctcccccaatacaatttttgagttcccccaaattagggagattttttatta 39889747  T
Q  232 t 232  Q
    |    
T  39889748 t 39889748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 42488617 - 42488778
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactc----------caaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| |||          |||||||||  ||| ||| |||||||||||||||||||||||||  |||||| ||| |    
T  42488617 agattgaatttgaaaaattcatataaaccctcaataaccccacaaaaccctcccccgatacaatttttgagttcccccaaatgagggagattttttatca 42488716  T
Q  232 tcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
    ||      | || |||||||||| | |||  ||||||||| |||| | ||||||||||||||| ||||    
T  42488717 tc------agtaaaaaattaacctccaaaaccctctcctcccaatgtcttctatttcttccacttgct 42488778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 8156381 - 8156490
Alignment:
Q  185 cccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaacc-ccaaaagtcctctcctctcaatttattct 283  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| |||      ||||| || |||||||||| ||||||| ||||||||  |||| | ||||    
T  8156381 cccaatacaatttttaagttcccccaaatgagggggattttttat------tataagtaaaaaattaacctccaaaagccctctccttccaatgttttct 8156474  T
Q  284 atttcttccacatgct 299  Q
    ||||||| ||| ||||    
T  8156475 atttctttcacttgct 8156490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 32299130 - 32299086
Alignment:
Q  187 caataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||    
T  32299130 caatacaatttttgagttcccccaaatgagggggattttttatta 32299086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 43036313 - 43036401
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    ||||| |||||||| ||||||||||||| |||| |||||     |||||| ||||||| ||||| |||||||||||||| |||| ||||    
T  43036313 agattaaatttgaagaattcatataaaccctcccaaacctccctccaatacaattttttagttctcccaaatgaggagggttttatatt 43036401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 52068143 - 52068227
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||| ||| ||| | ||||||||||   |||||| ||||||| |||||| ||||||||||||  |||||||||||    
T  52068143 aatttgaagaattcttattaaccccccaaaaccctcctccaatacaattttttagttcctccaaatgaggagagttttgtattat 52068227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 896485 - 896524
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  896485 agattgaatttgaaaaattcatataaaccctccataaccc 896524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 299
Target Start/End: Original strand, 1688209 - 1688367
Alignment:
Q  144 attgaatttgaaaaattcatataaacact----------ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatc 233  Q
    |||||||||||||||||||||||||| ||          ||||||| ||  ||||||| |||||||||||| |||||||||||| ||||||| |||        
T  1688209 attgaatttgaaaaattcatataaaccctccataaccccccaaaactctcccccaatacaatttttgagtt-ccccaaatgagggggattttttat---- 1688303  T
Q  234 aatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
      ||| | || |||||||||| | |||| ||||||||| |||| | ||||||||||||||| ||||    
T  1688304 --tatgagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgct 1688367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 5584555 - 5584496
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||   |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  5584555 ccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattat 5584496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 7401487 - 7401555
Alignment:
Q  121 tttttagagaataataaactaa--------gattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||| |||||    
T  7401487 tttttagagaataataaactaatgcttatggattgaatttgaaaaattcatataaaccctccataaccc 7401555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 32299193 - 32299154
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  32299193 agattgaatttgaaaaattcatataaaccctccataaccc 32299154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 36886960 - 36886921
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  36886960 agattaaatttgaaaaattcatataaaccctccaaaaccc 36886921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 42162043 - 42162082
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  42162043 agattgaatttgaaaaattcatataaaccctccataaccc 42162082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 50247687 - 50247586
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca-----------aaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    |||||||||||||||||||||||||||| |||||           |||||||  ||||||| ||| |||||||||||  |||||||||||||||| ||||    
T  50247687 agattgaatttgaaaaattcatataaaccctccataactcccccgaaaccctcccccaatacaatctttgagttcccataaatgaggaggattttttatt 50247588  T
Q  231 at 232  Q
    ||    
T  50247587 at 50247586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 28773382 - 28773467
Alignment:
Q  143 gattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagtt-cccccaaatgaggaggattttgtatt 230  Q
    ||||| |||||||||| |||||||| | |||||||||||   ||||||| ||||||| |||| ||||||||  ||| ||||||||||||    
T  28773382 gattggatttgaaaaaatcatataacccctccaaaaccc---cccaatacaattttttagttccccccaaacaagggggattttgtatt 28773467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 29092123 - 29092077
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  29092123 ccaatacaattttttagttcctccaaatgaggagggttttgtattat 29092077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 37649660 - 37649706
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  37649660 ccaatacaattttttagttcctccaaatgaggagggttttgtattat 37649706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 27102869 - 27102914
Alignment:
Q  187 caataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||||||| |||||||||| ||| ||||||||||||    
T  27102869 caatacaatttttgagtttccccaaatgaagagcattttgtattat 27102914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 33854829 - 33854865
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaa 178  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  33854829 agattaaatttgaaaaattcatataaacgctccaaaa 33854865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 33926093 - 33926057
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaa 178  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  33926093 agattaaatttgaaaaattcatataaacgctccaaaa 33926057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 34154334 - 34154418
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| || ||||| ||| ||| |||||||||||    |||||| ||||||| |||||| ||||||||||| | |||||||||||    
T  34154334 aatttaaagaattcttattaaccctccaaaacccccctccaatacaattttttagttcctccaaatgaggaaggttttgtattat 34154418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 51303227 - 51303259
Alignment:
Q  193 aatttttgagttcccccaaatgaggaggatttt 225  Q
    |||||||||||||| ||||||||||||||||||    
T  51303227 aatttttgagttccaccaaatgaggaggatttt 51303259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 5968043 - 5968126
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggatttt 225  Q
    |||||||||||||||||||||||||||| ||||| ||||||  || |||| ||||||||||||||||||||||||| |||||||    
T  5968043 agattgaatttgaaaaattcatataaaccctccataaccctcccctaatacaatttttgagttcccccaaatgagggggatttt 5968126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 38505334 - 38505424
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||| ||||||||||||| ||||||||||||   |||||| ||||||  |||||||||||||||||||| |||||||||||    
T  38505334 agattaaatttgaagaattcatataaaccctccaaaaccctcctccaatacaattttatagttcccccaaatgaggagggttttgtattat 38505424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 34652082 - 34652202
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||| ||||||| |||      ||||| || |||||||||| | |||| |||||||||     
T  34652082 ccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggattttttat------tataagtaaaaaattaacctccaaagccctctcctcc 34652175  T
Q  273 caatttattctatttcttccacatgct 299  Q
    |||| | ||||||||||||||| ||||    
T  34652176 caatgtcttctatttcttccacttgct 34652202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 43188948 - 43188861
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||||||||||||||||| ||||| ||||    ||||||| ||| ||||||||||||||||||||| | ||||| ||||||    
T  43188948 agattgaatttgaaaaattcatataaaccctccataacc---acccaatacaatatttgagttcccccaaatgaggtgaattttttattat 43188861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 19644383 - 19644292
Alignment:
Q  142 agattgaatttgaaaaa-ttcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||||||||| ||||||||||  ||||||||||||   |||||| |||||||||||||||| |||| ||| ||||||| ||||||    
T  19644383 agattgaatttgaaaaaattcatataaatcctccaaaaccctcatccaatacaatttttgagttcccctaaataagggggattttttattat 19644292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 23620824 - 23620944
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    ||||||||||  || |||| ||||||||||||||||||||||||| ||||||| |||      ||||| || |||||||||| | |||| |||||||||     
T  23620824 ccaaaaccctccccaaatacaatttttgagttcccccaaatgagggggattttttat------tataagtaaaaaattaacctccaaagccctctcctcc 23620917  T
Q  273 caatttattctatttcttccacatgct 299  Q
    |||| | ||||||||||||||| ||||    
T  23620918 caatgtcttctatttcttccacttgct 23620944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 38138022 - 38137932
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||| |||||||||| ||  ||||| |||||   |||||| || ||||||| |||||||||||||||||||||||||||||    
T  38138022 agattaaatttgaagaattcatatagaccttccaataccctcctccaatacaaattttgagctcccccaaatgaggaggattttgtattat 38137932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 43348229 - 43348319
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||| ||||||||| ||| ||||||||||||   | |||| ||||||| ||||||||||||| |||||||||| |||||||    
T  43348229 agattaaatttgaagaattcatattaaccctccaaaaccctcctctaatacaattttttagttcccccaaataaggaggatttagtattat 43348319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 299
Target Start/End: Original strand, 3658544 - 3658662
Alignment:
Q  175 aaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctctca 274  Q
    ||||||||  ||||||| ||||||||||||||||||||||||| ||||||| |||      ||| | || |||||||||||| ||||  |||||||| ||    
T  3658544 aaaaccctcccccaatacaatttttgagttcccccaaatgagggggattttttat------tatgagtaaaaaattaacccccaaagctctctcctccca 3658637  T
Q  275 atttattctatttcttccacatgct 299  Q
    || | ||||||||||||||| ||||    
T  3658638 atgtcttctatttcttccacttgct 3658662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 6746575 - 6746659
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||||||||||| ||||||| |||    |||||| ||||||||||||||||||||||||||   |||||||||||    
T  6746575 aatttgaagaattcatataaaccctccaaaccccccctccaatacaatttttgagttcccccaaatgaggaaagttttgtattat 6746659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 33406663 - 33406722
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||| |||||||| ||||||||||||||| ||||||||| ||||||| ||||||    
T  33406663 ccaaaaccctctcccaatacaatttttgagttccctcaaatgagggggattttttattat 33406722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 33872110 - 33872201
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttc-ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||| ||||||||||||| |||||||| || | | |||||| ||||| | |||||||||||||||||||| ||| |||||||    
T  33872110 agattaaatttgaagaattcatataaaccctccaaaaaccctcctccaatacaatttgttagttcccccaaatgaggagggtttagtattat 33872201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 46745588 - 46745682
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaata 237  Q
    ||||||||||| |||||||||||||||| | ||| || |||   |||||| ||||||||||||||||||||||||  |||||||| ||||| ||||    
T  46745588 agattgaatttaaaaaattcatataaaccc-ccagaatcctcctccaatacaatttttgagttcccccaaatgagagggattttgcattatgaata 46745682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 3571749 - 3571849
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactc----------caaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||| |||||||||||||||||||||||||          |||||||||  | ||||| ||||||||||||||||||||||||| ||||||| |||||    
T  3571749 agattggatttgaaaaattcatataaacactctataaccccccaaaaccctcccgcaatacaatttttgagttcccccaaatgagggggattttttatta 3571848  T
Q  232 t 232  Q
    |    
T  3571849 t 3571849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 172 - 299
Target Start/End: Original strand, 33113669 - 33113792
Alignment:
Q  172 tccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctc 271  Q
    |||||||||||  || |||| |||||||||||||||| |||||||| ||||||| | ||||||   | | || |||||||||| | |||| |||||||||    
T  33113669 tccaaaaccctccccaaatacaatttttgagttcccc-aaatgagggggatttttttttatca---tgagtagaaaattaacctccaaagccctctcctc 33113764  T
Q  272 tcaatttattctatttcttccacatgct 299  Q
     |||| | ||||||||||||||| ||||    
T  33113765 ccaatgtcttctatttcttccacttgct 33113792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 41002241 - 41002341
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca----------aaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| |||||          |||||||  ||||||| ||||||||||||||||||||||||| | ||||| |||||    
T  41002241 agattgaatttgaaaaattcatataaaccctccataaccccctaaaaccctcccccaatataatttttgagttcccccaaatgaggggaattttttatta 41002340  T
Q  232 t 232  Q
    |    
T  41002341 t 41002341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 47276045 - 47276147
Alignment:
Q  185 cccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattcta 284  Q
    ||||||| ||||||||||||||||||||||||| ||||||| |||      ||||| || |||||||||| | |||| |||||||||  ||| | |||||    
T  47276045 cccaatataatttttgagttcccccaaatgagggggattttttat------tataagtaaaaaattaacctccaaagccctctcctccaaatgtcttcta 47276138  T
Q  285 tttcttcca 293  Q
    |||||||||    
T  47276139 tttcttcca 47276147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 45940406 - 45940490
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||| ||| ||| ||||||||| ||   |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  45940406 aatttgaagaattcttattaaccctccaaaactctactccaatacaattttttagttcctccaaatgaggagggttttgtattat 45940490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 28437586 - 28437632
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  28437586 ccaatacaatttttgagttcccccaaatgagggggattttttattat 28437632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 31891367 - 31891277
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||| ||||||||||||| |||||||| ||| |   |||| || |||| ||||||||||| |||| || ||||||||||||    
T  31891367 agattaaatttgaagaattcatataaactctccaaaatcctctttaaatacaagtttttagttcccccaattgagaagcattttgtattat 31891277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 41471479 - 41471442
Alignment:
Q  193 aatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  41471479 aatttttcagttcccccaaatgaggaggattttgtatt 41471442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 42471522 - 42471486
Alignment:
Q  141 aagattgaatttgaaaaattcatataaacactccaaa 177  Q
    |||||||||||| ||||||||||||||||||||||||    
T  42471522 aagattgaatttaaaaaattcatataaacactccaaa 42471486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 2826278 - 2826337
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||   |||||| ||||||| |||||||||||||||||||| ||| |||||||    
T  2826278 ccaaaaccctcctccaatacaattttttagttcccccaaatgaggagggtttagtattat 2826337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 14676252 - 14676213
Alignment:
Q  193 aatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  14676252 aatttttgagttcccacaaatgaggaggatttagtattat 14676213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 32429937 - 32430019
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||| ||||||||||||| ||| ||||| || ||| |||| | |||||||||||||| || ||| |||||||||| ||||    
T  32429937 aatttgaagaattcatataaaccctcaaaaactctctcc-aatacattttttgagttccccaaattgaagaggattttgcatta 32430019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 42220128 - 42220093
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaa 177  Q
    |||||||||||||||||||||||||||| |||||||    
T  42220128 agattgaatttgaaaaattcatataaaccctccaaa 42220093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 42620342 - 42620381
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  42620342 agattgaatttgaaaaattcatataaaccctccataaccc 42620381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 44720158 - 44720095
Alignment:
Q  154 aaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccc-caaatgag 216  Q
    |||||||||||||||| ||||| ||||||   |||||| |||||||||||||||| ||||||||    
T  44720158 aaaaattcatataaaccctccataaccctcctccaatacaatttttgagttcccctcaaatgag 44720095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 13697319 - 13697273
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| || |||| |||||||||||||||||||| |||||||||||    
T  13697319 ccaatacaactttttagttcccccaaatgaggagggttttgtattat 13697273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 15748993 - 15749039
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  15748993 ccaatacaattttttagttcctccaaatgaggagggttttgtattat 15749039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 23466041 - 23466087
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||| ||||||||| |||||||||||| |||||||||||    
T  23466041 ccaatacaatttgtgagttccctcaaatgaggagggttttgtattat 23466087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 42854274 - 42854240
Alignment:
Q  196 ttttgagttcccccaaatgaggaggattttgtatt 230  Q
    ||||||||||||||| |||||||||||||||||||    
T  42854274 ttttgagttcccccacatgaggaggattttgtatt 42854240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 38235885 - 38235852
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca 175  Q
    |||||||||||||||||||||||||||| |||||    
T  38235885 agattgaatttgaaaaattcatataaaccctcca 38235852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 42253994 - 42253949
Alignment:
Q  187 caataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  42253994 caatataattttttagttcctccaaatgaggagggttttgtattat 42253949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 45510433 - 45510344
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    ||||| |||||||| ||||| | ||||| ||||||||||||   |||||| ||||||||| || |||||||| ||||   ||||||||||    
T  45510433 agattaaatttgaagaattcgtctaaaccctccaaaaccctcatccaatataatttttgaatttccccaaatcaggatagttttgtatta 45510344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 19644219 - 19644159
Alignment:
Q  172 tccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||  | |||||  |||||||||||||||||||||||| || |||| ||||||    
T  19644219 tccaaaaccctcccacaatacgatttttgagttcccccaaatgaggggggttttttattat 19644159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 33810244 - 33810292
Alignment:
Q  174 caaaaccctttcccaataaaatttttgagttcccccaaatgaggaggat 222  Q
    |||||||||  ||||||| ||||||||||||| ||||||||||| ||||    
T  33810244 caaaaccctcccccaatacaatttttgagttctcccaaatgagggggat 33810292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 39670853 - 39670885
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcc 174  Q
    |||||||||||||||||||||||||||| ||||    
T  39670853 agattgaatttgaaaaattcatataaaccctcc 39670885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 43665159 - 43665191
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcc 174  Q
    |||||||||||||||||||||||||||| ||||    
T  43665159 agattgaatttgaaaaattcatataaaccctcc 43665191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 43741740 - 43741696
Alignment:
Q  188 aataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||| ||||||||||||| |||||||||||||  |||||||||||    
T  43741740 aatacaatttttgagttctcccaaatgaggagagttttgtattat 43741696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 37756713 - 37756864
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaa 241  Q
    ||||||||||||||||||||||||||||   || |||||||   |||| | ||||||||||||||||||||||||| ||||||| |||      ||| |     
T  37756713 agattgaatttgaaaaattcatataaacctcccgaaaccctcctccaacacaatttttgagttcccccaaatgagggggattttttat------tatgag 37756806  T
Q  242 tataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
    || |||||||||| | |||| ||||||||| |||| | ||||||||||||||| ||||    
T  37756807 taaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgct 37756864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 32948516 - 32948599
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggatttt 225  Q
    |||||||||||||||||||||||||||| ||||| ||| ||  ||||||| ||||||||||||||| ||||||| | |||||||    
T  32948516 agattgaatttgaaaaattcatataaaccctccataactctcgcccaatacaatttttgagttccctcaaatgaaggggatttt 32948599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 38317260 - 38317380
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||||||||| |||      ||| | || |||||||||| | |||| |||||||||     
T  38317260 ccaaaaccctcccccaatacaatttttgagttcccccaaatgaggaggattttttat------tatgagtaaaaaattaacctccaaagccctctcctcc 38317353  T
Q  273 caatttattctatttcttccacatgct 299  Q
    |||| | ||||||||||||||| ||||    
T  38317354 caatgtcttctatttcttccacttgct 38317380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 46176927 - 46177017
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||||||||||||||||| | ||||||||||   |||||| || |||| |||||| ||||||||||||| |||||||||||    
T  46176927 agattaaatttgaaaaattcatataaaccccccaaaaccctcctccaatacaactttttagttcctccaaatgaggagggttttgtattat 46177017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 23708227 - 23708120
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaa 241  Q
    |||||| ||||||||||||||||||||| ||||| || |||  ||||||| ||||||||||||||||||||| ||   |||||| |||||| | || |||    
T  23708227 agattggatttgaaaaattcatataaaccctccataatcctcccccaatacaatttttgagttcccccaaataagtgagattttttattatgagta-aaa 23708129  T
Q  242 tataaaatt 250  Q
    |||||||||    
T  23708128 tataaaatt 23708120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 49936593 - 49936506
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||| ||||||||||||| || | || ||||   |||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  49936593 agattgaatttgaagaattcatataaacccttctaatccct---ccaatacaattttttagttcccccaaattaggaggattttgtattat 49936506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 31530069 - 31530010
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  31530069 ccaaaaccctcccccaatacaatttttgagttcccccaaatgaggaggattttttattat 31530010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 56504459 - 56504619
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaacc---------ctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||||||||||||||||| |||| |||||         | | ||||||| |||||||||||||||||||||||||  |||||||||||||    
T  56504459 agattgaatttgaaaaattcatataaaccctccgaaacctcccaaaaccctccccaatacaatttttgagttcccccaaatgagggagattttgtattat 56504558  T
Q  233 caatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
       |||||    |||||||||| | |||| ||||||||| |||| | ||||||||||| ||| ||||    
T  56504559 --gtataa----aaaattaacctccaaagccctctcctcccaatgtcttctatttcttgcacttgct 56504619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 7182181 - 7182281
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca----------aaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| |||||          |||||||  ||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  7182181 agattgaatttgaaaaattcatataaaccctccataaccccccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggattttttatta 7182280  T
Q  232 t 232  Q
    |    
T  7182281 t 7182281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 29114239 - 29114323
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||| ||| ||| ||||||||||||   |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  29114239 aatttgaagaattcttattaaccctccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattat 29114323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 45823630 - 45823546
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||||||||||| ||||||||||||    ||||| ||||||| |||| ||||||||||||||  |||||||||||    
T  45823630 aatttgaagaattcatataaactctccaaaaccctccttcaatacaatttttaagtttccccaaatgaggagagttttgtattat 45823546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 41363843 - 41363963
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    ||||||||||  ||||||| |||||||||||||||||| |||||| ||||||| |||      ||| | || |||||||||| | |||| |||||||||     
T  41363843 ccaaaaccctcccccaatacaatttttgagttcccccacatgagggggattttttat------tatgagtaaaaaattaacctccaaagccctctcctcc 41363936  T
Q  273 caatttattctatttcttccacatgct 299  Q
    |||| | ||||||||||||||| ||||    
T  41363937 caatgtcttctatttcttccacttgct 41363963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 20533977 - 20533862
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||  |||||| |||      ||| | || |||||||||| | |||||| |||||||     
T  20533977 ccaaaaccctcccccaatacaatttttgagttcccccaaatgagggagattttttat------tatgagtaaaaaattaacctccaaagtcttctcctcc 20533884  T
Q  273 caatttattctatttcttccac 294  Q
    |||| | |||||||||||||||    
T  20533883 caatgtcttctatttcttccac 20533862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 904288 - 904188
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca----------aaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| |||||          |||||||  | ||||| ||||||||||||||||||||||||| ||||||| |||||    
T  904288 agattgaatttgaaaaattcatataaactctccataaccccccaaaaccctccctcaatacaatttttgagttcccccaaatgagggggattttttatta 904189  T
Q  232 t 232  Q
    |    
T  904188 t 904188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 48417602 - 48417671
Alignment:
Q  144 attgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaat 213  Q
    |||||||||||| |||||||||| || |||||||| |||   |||||| |||||||||||||||||||||    
T  48417602 attgaatttgaagaattcatatagaccctccaaaatcctcctccaatacaatttttgagttcccccaaat 48417671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 35959271 - 35959187
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| |||| |||||||| | ||||||| ||   |||||| || |||| |||||||||||||||||||| |||||||||||    
T  35959271 aatttgaagaatttatataaaccccccaaaacgctcctccaatacaactttttagttcccccaaatgaggagggttttgtattat 35959187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 43031710 - 43031749
Alignment:
Q  144 attgaatttgaaaaattcatataaacactccaaaaccctt 183  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  43031710 attgaatttgaaaaattcatataaacactccaaatccctt 43031749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 54205869 - 54205830
Alignment:
Q  193 aatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  54205869 aatttttgagttcccccaaatgaggaggattttgttttat 54205830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 299
Target Start/End: Complemental strand, 17873235 - 17873126
Alignment:
Q  185 cccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattcta 284  Q
    ||||||| ||||||||||||||||||||| ||| ||||||| |||||| | ||     | || ||||||| | |||| ||||||||| |||| | |||||    
T  17873235 cccaatacaatttttgagttcccccaaataagggggattttttattatgagta-----aaaagattaacctccaaagccctctcctcccaatgtcttcta 17873141  T
Q  285 tttcttccacatgct 299  Q
    |||||||||| ||||    
T  17873140 tttcttccacttgct 17873126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 49404613 - 49404697
Alignment:
Q  142 agattgaatttgaaaaattcatataaacact----------ccaaaaccctttcccaataaaatttttgagttcccccaaatgag 216  Q
    |||||||||||||||||||||||||||| ||          ||||||||||| ||||||| || |||||||||||||||||||||    
T  49404613 agattgaatttgaaaaattcatataaaccctgcataacctcccaaaacccttccccaatacaaattttgagttcccccaaatgag 49404697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 3127002 - 3127093
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcc---------aaaaccctttcccaataaaatttttgagttcccccaaatgaggaggatttt 225  Q
    |||||||||||||||||||||||||||| ||||         ||||||||   |||||| ||||||||||||||||||||||| |||||||||    
T  3127002 agattgaatttgaaaaattcatataaaccctccttaaccccgaaaaccctcctccaatacaatttttgagttcccccaaatga-gaggatttt 3127093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 47669901 - 47669861
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccct 182  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  47669901 agattgaatttgaaaaattcatataaaccctccataaccct 47669861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 12708865 - 12708924
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||   |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  12708865 ccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattat 12708924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 299
Target Start/End: Complemental strand, 16535741 - 16535621
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    |||| |||||| ||||||| ||||||| |||||||||||||||||   ||||| |||      ||| | || |||||||||| | |||| |||||||||     
T  16535741 ccaagacccttccccaatacaattttttagttcccccaaatgagggatattttttat------tatgagtaaaaaattaacctccaaagccctctcctcc 16535648  T
Q  273 caatttattctatttcttccacatgct 299  Q
    |||| | ||||||||||||||| ||||    
T  16535647 caatgtcttctatttcttccacttgct 16535621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 17622502 - 17622545
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgag 216  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||    
T  17622502 ccaaaaccctcccccaatacaatttttgagttcccccaaatgag 17622545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 232
Target Start/End: Original strand, 28175515 - 28175554
Alignment:
Q  193 aatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  28175515 aattttttagttcctccaaatgaggaggattttgtattat 28175554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 41844485 - 41844426
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||  || |||| |||||||||||||||||||||||||  |||||| ||||||    
T  41844485 ccaaaaccctcccctaatacaatttttgagttcccccaaatgagggagattttttattat 41844426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 13270265 - 13270303
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaacc 180  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  13270265 agattgaatttgaaaaattcatataaaccctccataacc 13270303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 21296137 - 21296195
Alignment:
Q  174 caaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||  ||||||| ||||||||||||| ||||||| ||| ||||||| ||||||    
T  21296137 caaaaccctcccccaatacaatttttgagttctcccaaataagggggattttttattat 21296195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 30198815 - 30198861
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  30198815 ccaatacaattttttagttcctccaaatgaggagggttttgtattat 30198861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 30307408 - 30307366
Alignment:
Q  188 aataaaatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    |||| ||||||| ||||||||||||||||||||||||| ||||    
T  30307408 aatacaattttttagttcccccaaatgaggaggattttatatt 30307366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 31428877 - 31428803
Alignment:
Q  157 aattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    ||||||| ||||  |||||||||| | | |||||| ||||||| | ||||||||||||| |||| ||||||||||    
T  31428877 aattcatgtaaatcctccaaaaccatcttccaatacaattttttaattcccccaaatgaagagggttttgtatta 31428803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 48830805 - 48830843
Alignment:
Q  143 gattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  48830805 gattgaatttgaaaaattcatacaaacactccataaccc 48830843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 49668104 - 49668182
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggagg 220  Q
    ||||| ||||| |||||||||| ||||| | ||||||||||   |||||| ||||||| |||||||  |||||||||||    
T  49668104 agattaaatttaaaaaattcatgtaaaccccccaaaaccctcctccaatacaattttttagttcccttaaatgaggagg 49668182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 27485295 - 27485332
Alignment:
Q  195 tttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  27485295 ttttcgagttccctcaaatgaggaggattttgtattat 27485332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 32060737 - 32060704
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca 175  Q
    |||||||||||||||||||||||||||| |||||    
T  32060737 agattgaatttgaaaaattcatataaaccctcca 32060704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 42650686 - 42650629
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    ||||||||||   |||||| ||||||| |||||||||||||||||||| |||| ||||    
T  42650686 ccaaaaccctcctccaatacaattttttagttcccccaaatgaggagggttttatatt 42650629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 52594654 - 52594698
Alignment:
Q  171 ctccaaaaccctttcccaataaaatttttgagttcccccaaatgag 216  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||    
T  52594654 ctccaaaaccctc-cccaatacaatttttgagttcccccaaatgag 52594698  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 368096 - 368060
Alignment:
Q  196 ttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  368096 ttttgagctcccccaaatgaggagggttttgtattat 368060  T

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Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 43793489 - 43793449
Alignment:
Q  141 aagattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||| ||||| |||||||||||||||| |||||||||||    
T  43793489 aagattaaatttaaaaaattcatataaaccctccaaaaccc 43793449  T

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Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 24588283 - 24588373
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||| ||||||||| ||||||| ||||| |||||||||| |  ||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  24588283 agatggaatttgaagaattcatttaaaccctccaaaaccatcccccaatacaatttttgagttcctccaaatgagggggattttgtattat 24588373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 34306689 - 34306623
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccc 208  Q
    |||||||||||||||||||||||||||| ||||||||||||  ||||||| ||||||||||||||||    
T  34306689 agattgaatttgaaaaattcatataaaccctccaaaaccctcccccaatacaatttttgagttcccc 34306623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 24242123 - 24242243
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||| ||||||| |||      ||| | || |||||||||| | ||||||||||||||     
T  24242123 ccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggattttttat------tatgagtaaaaaattaacctccaaagtcctctcctcc 24242216  T
Q  273 caatttattctatttcttccacatgct 299  Q
    |||| | ||||||||||||||| ||||    
T  24242217 caatatcttctatttcttccacttgct 24242243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 2420750 - 2420662
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||||||||||||||||| ||||||||| | | ||||||| |||||||||||| ||||||||||||  |||||| ||||||    
T  2420750 agattgaatttgaaaaattcatataaaccctccaaaactc-tccccaatacaatttttgagtt-ccccaaatgagggagattttttattat 2420662  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 38515328 - 38515241
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||||||||||| |||||||| ||||| |||||   || |||| ||||||||||||| ||||||||||| ||||||| ||||||    
T  38515328 agattgaatttgaaaaatttatataaaccctccataaccc---ccaaatacaatttttgagttctcccaaatgagggggattttttattat 38515241  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 1132925 - 1133015
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| ||||| || ||||||| ||||| ||||||||||||   |||||| |||||||||||||||| ||||||||||  |||||||||||    
T  1132925 agattaaatttaaagaattcatgtaaaccctccaaaaccctcctccaatacaatttttgagttccccaaaatgaggagagttttgtattat 1133015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 42583288 - 42583359
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgagg 217  Q
    ||||||||||||||||||||||||||||  |||| |||||    |||||| |||||||||||||||||||||||||    
T  42583288 agattgaatttgaaaaattcatataaactatccataaccc----ccaatacaatttttgagttcccccaaatgagg 42583359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 294
Target Start/End: Original strand, 46312410 - 46312567
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca-----------aaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    |||||||||||||||||||||||||||| |||||           |||||||  ||||||| |||||||||||||||||||||||||| ||||||         
T  46312410 agattgaatttgaaaaattcatataaaccctccataatcctccaaaaaccctcccccaatacaatttttgagttcccccaaatgaggaagatttt----- 46312504  T
Q  231 atcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccac 294  Q
     ||| ||| | || |||||||||| | |||| ||||||||| |||| | |||||||||||||||    
T  46312505 -tcattatgagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccac 46312567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 40118893 - 40118969
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgt 227  Q
    |||||||| |||||||| |||| ||||||||||||   |||||| ||||||| |||||||||||||||||||| ||||||    
T  40118893 aatttgaagaattcatacaaaccctccaaaaccct---ccaatacaattttttagttcccccaaatgaggagggttttgt 40118969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 38639664 - 38639580
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||| ||| ||| ||||||||||||   |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  38639664 aatttgaagaattcttattaaccctccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattat 38639580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 52620831 - 52620915
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||||||| ||| |  |||||||||   |||||| ||||||||||||| |||||||||||||||||| |||||||    
T  52620831 aatttgaagaattcatattaacccctcaaaaccctcctccaatacaatttttgagttctcccaaatgaggaggatttggtattat 52620915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 3043149 - 3043269
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    ||||||||||  ||||||| ||||||||||||||||||||| ||| ||||||| |||      ||| | || |||||||||| | |||| |||||||||     
T  3043149 ccaaaaccctcccccaatacaatttttgagttcccccaaatcagggggattttttat------tatgagtaaaaaattaacctccaaaggcctctcctcc 3043242  T
Q  273 caatttattctatttcttccacatgct 299  Q
    |||| | ||||||||||||||| ||||    
T  3043243 caatgtcttctatttcttccacttgct 3043269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 38526203 - 38526144
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||| |||||||| |||||||||||||||||||||||||  |||||| ||||||    
T  38526203 ccaaaaccctctcccaatacaatttttgagttcccccaaatgagggagattttatattat 38526144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 41961967 - 41962065
Alignment:
Q  142 agattgaatttgaaaaattcatataaacact----------ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    |||||||||||||||||||||||||||| ||          ||||||||||  ||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  41961967 agattgaatttgaaaaattcatataaacccttcataaccccccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggattttttatt 41962065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 37674143 - 37674227
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtat 229  Q
    ||||| |||||||||||||| ||| ||| ||||||||||||   |||||| ||||||| |||||| | ||||||||||| ||||||||    
T  37674143 agattaaatttgaaaaattcttattaaccctccaaaaccct---ccaatacaattttttagttcctcaaaatgaggagggttttgtat 37674227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 45555724 - 45555624
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca----------aaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| |||||          |||||||  | ||||| ||||||||||||||||||||||||| ||||||| |||||    
T  45555724 agattgaatttgaaaaattcatataaaccctccatagccccccaaaaccctcccacaatacaatttttgagttcccccaaatgagggggattttttatta 45555625  T
Q  232 t 232  Q
    |    
T  45555624 t 45555624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 32858865 - 32858821
Alignment:
Q  188 aataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||    
T  32858865 aatacaatttttgagttcccccaaatgaggaggattttatattat 32858821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 50535108 - 50535192
Alignment:
Q  149 atttgaaaaattcatataaacactccaaaaccctttc-ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||| ||||||||||||| ||||||||  | ||| |||||| ||||||| |||||||| ||||||||||| ||| |||||||    
T  50535108 atttgaagaattcatataaaccctccaaaaatccttctccaatacaattttttagttcccctaaatgaggagggtttagtattat 50535192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 53664605 - 53664689
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||| ||| ||| ||| ||||||||   |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  53664605 aatttgaagaattcttattaaccctcgaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattat 53664689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 33982729 - 33982870
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaa 241  Q
    |||||||||||||||||||||||||||| ||||          |||| || ||||||| |||||||||||||||||| |||| | |||||| | || |||    
T  33982729 agattgaatttgaaaaattcatataaaccctcc----------cccactacaatttttaagttcccccaaatgaggaagattctttattatgagtaaaaa 33982818  T
Q  242 tataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
          ||||||| | |||||||||||||| |||| | ||||||||||||||| ||||    
T  33982819 ------attaacctccaaagtcctctcctcccaatgtcttctatttcttccacttgct 33982870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 36796461 - 36796414
Alignment:
Q  185 cccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  36796461 cccaatacaatttttgagttcccccaaatgagggggattttttattat 36796414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 49683044 - 49683091
Alignment:
Q  185 cccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  49683044 cccaatacaatttttgagttcccccaaatgagggggattttttattat 49683091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 3537245 - 3537199
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||    
T  3537245 ccaatacaattttttagttcccccaaatgaggagggttttgtattat 3537199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 15499343 - 15499389
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||||||||| |||||||||||| |||||||||||||    
T  15499343 ccaatacaatttttgagttctcccaaatgaggaagattttgtattat 15499389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 517685 - 517721
Alignment:
Q  196 ttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||||||||||||||||| |||||||||||    
T  517685 ttttgagttcccccaaatgaggagggttttgtattat 517721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 33281712 - 33281796
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||||| ||||| |  ||||| ||| | |||||| ||||||||||||||   |||||||||||||||| ||||||    
T  33281712 aatttgaagaattcatttaaacccctcaaaatcctcttccaatacaatttttgagttcctataaatgaggaggattttatattat 33281796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 42155960 - 42156043
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||||||||||| ||  |||||| |  ||||||| ||||||||||||||  |||||||||   ||||||||||||    
T  42155960 aatttgaaaaattcatataaaccctt-aaaaccttcccccaatataatttttgagttccttcaaatgagggaaattttgtattat 42156043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 47434310 - 47434350
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccct 182  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  47434310 agattgaatttgaaaaattcatataaaccctccataaccct 47434350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 47714663 - 47714703
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccct 182  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  47714663 agattgaatttgaaaaattcatataaaccctccataaccct 47714703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 55439619 - 55439514
Alignment:
Q  188 aataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattctattt 287  Q
    |||| |||||||||||||| |||||||||| ||||||| |||      ||| | || |||||||||| | |||||||||||||| |||| |  |||||||    
T  55439619 aatacaatttttgagttcctccaaatgagggggattttttat------tatgagtaaaaaattaacctccaaagtcctctcctcccaatgtcctctattt 55439526  T
Q  288 cttccacatgct 299  Q
    ||||||| ||||    
T  55439525 cttccacttgct 55439514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 31178277 - 31178336
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||| ||||||| ||||||| ||||| |||||||||||  |||||| ||||||    
T  31178277 ccaaaacccttccccaatacaatttttaagttctcccaaatgagggagattttttattat 31178336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 33944671 - 33944730
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||   |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  33944671 ccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattat 33944730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 39499289 - 39499250
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  39499289 agattgaatttgaaaaattcatataaaccctccataaccc 39499250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 43237340 - 43237282
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||  ||||||| |||| |||||||||||||||||||| ||||||| ||||||    
T  43237340 ccaaaaccctcccccaatacaattgttgagttcccccaaatgagg-ggattttttattat 43237282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 44400790 - 44400703
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtat 229  Q
    ||||| |||||||||||||| ||| ||| || |||||||||   |||||| ||||||| |||||  |||||||| |||| ||||||||    
T  44400790 agattaaatttgaaaaattcttattaaccctacaaaaccctcctccaatacaattttttagttcgtccaaatgaagagggttttgtat 44400703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 299
Target Start/End: Original strand, 47789436 - 47789597
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca----------aaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| |||||          |||||||  ||||||| |||||||||||||||||| |||||| ||||||  | |||    
T  47789436 agattgaatttgaaaaattcatataaaccctccataaccccccaaaaccctcccccaatacaatttttgagttcccccagatgagg-ggattt--tttta 47789532  T
Q  232 tcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
    |   ||| | || || ||||||| | ||||  ||||||||||||| | ||||||||||||||| ||||    
T  47789533 t---tatgagtaaaagattaacctccaaagctctctcctctcaatgtcttctatttcttccacttgct 47789597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 11040872 - 11040918
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||||||||||||||||| |||  |||||||||||||    
T  11040872 ccaatacaatttttgagttcccccaaataagggagattttgtattat 11040918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 25754146 - 25754192
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  25754146 ccaatacaattttttagttcctccaaatgaggagggttttgtattat 25754192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 39114954 - 39115041
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||| ||||||||||||| ||| |||  |||   |||||| ||  |||||||||||| |||| ||||||||||| |||||    
T  39114954 agattgaatttgaagaattcatataaaccctctaaagtcctcctccaatacaa--tttgagttccccaaaattaggaggattttatatta 39115041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 46017263 - 46017217
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||||||||| ||||||| ||||||||||| ||||||    
T  46017263 ccaatacaatttttgagttctcccaaataaggaggattttttattat 46017217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 49183776 - 49183699
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggagg 220  Q
    ||||| |||||||| ||||||||||||| ||||||||||||   | |||| ||||||| |||| | |||||||||||||    
T  49183776 agattaaatttgaagaattcatataaaccctccaaaaccctcctctaatacaattttttagtt-ctccaaatgaggagg 49183699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 27055894 - 27055927
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca 175  Q
    |||||||||||||||||||||||||||| |||||    
T  27055894 agattgaatttgaaaaattcatataaaccctcca 27055927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 30121512 - 30121545
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca 175  Q
    |||||||||||||||||||||||||||| |||||    
T  30121512 agattgaatttgaaaaattcatataaactctcca 30121545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 47714702 - 47714762
Alignment:
Q  171 ctccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||||  ||||||| |||||||||||| ||||||||||||  |||||| ||||||    
T  47714702 ctccaaaaccctcccccaatacaatttttgagtt-ccccaaatgagggagattttttattat 47714762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 51686591 - 51686558
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||| |||||||||||    
T  51686591 aatttgaaaaattcatataaaccctccaaaaccc 51686558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 35283124 - 35283080
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    |||||| ||||||| |||||||||||||||||||| |||| ||||    
T  35283124 ccaatacaattttttagttcccccaaatgaggagggttttatatt 35283080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 38593041 - 38593005
Alignment:
Q  144 attgaatttgaaaaattcatataaacactccaaaacc 180  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  38593041 attgaatttgaaaaattcatataaaccctccataacc 38593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 47359400 - 47359360
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccct 182  Q
    ||||| |||||||| ||||||||||||| ||||||||||||    
T  47359400 agattaaatttgaagaattcatataaaccctccaaaaccct 47359360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 26713938 - 26713862
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggatttt 225  Q
    |||||||| ||||||||||||| ||||||||||||   |||||| |||||||||||| ||||||||||||||||||||    
T  26713938 aatttgaagaattcatataaaccctccaaaaccctcctccaatacaatttttgagtt-ccccaaatgaggaggatttt 26713862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 13380622 - 13380531
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttc-ccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||| |||| || ||||| |||||||||||| | |||||| ||||||||||||| ||||||||||||| |||||| ||||||    
T  13380622 agattaaatttgaagaatttatgtaaacgctccaaaaccctcttccaatacaatttttgagttccccccaaatgaggatgattttatattat 13380531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 32719382 - 32719466
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||| ||| ||| ||||||||||||   |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  32719382 aatttgaagaattcttattaaccctccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattat 32719466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 26574426 - 26574485
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  26574426 ccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggattttttattat 26574485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 299
Target Start/End: Complemental strand, 24734971 - 24734812
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcc----------aaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| ||||          ||||||||  ||||||| ||  ||||||||||||||||||||| ||||||| |||      
T  24734971 agattgaatttgaaaaattcatataaaccctccataaccccctaaaaccctcccccaatacaa--tttgagttcccccaaatgagggggattttttat-- 24734876  T
Q  232 tcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
        ||| | || |||||||||| | |||| ||||||||| |||| | ||||||||||||||| ||||    
T  24734875 ----tatgagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgct 24734812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 11180188 - 11180249
Alignment:
Q  171 ctccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||| | |||||| |||| || |||||| ||||||||||||| |||||||||||    
T  11180188 ctccaaaaccctctaccaatacaattctttagttcctccaaatgaggagggttttgtattat 11180249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 23095118 - 23095218
Alignment:
Q  142 agattgaatttgaaaaattcatataaacact----------ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| ||          ||||||||||  ||| ||| ||||||| ||||||||||||||||| ||||||| |||||    
T  23095118 agattgaatttgaaaaattcatataaactctccataaccccccaaaaccctccccccatacaattttttagttcccccaaatgagggggattttttatta 23095217  T
Q  232 t 232  Q
    |    
T  23095218 t 23095218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 29241866 - 29241923
Alignment:
Q  175 aaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||  ||||||| |||||||||||| |||||||||||| ||||||| ||||||    
T  29241866 aaaaccctcccccaatacaatttttgagttaccccaaatgagggggattttttattat 29241923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 20820536 - 20820620
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||||||||||  ||| ||||| ||   |||||| ||||||| |||||||||||| ||||||  ||| |||||||    
T  20820536 aatttgaaaaattcatataaatcctctaaaactctcatccaatacaattttttagttcccccaaacgaggagagtttagtattat 20820620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 1029384 - 1029345
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  1029384 agattgaatttgaaaaattcatataaaccctccataaccc 1029345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 1567318 - 1567272
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  1567318 ccaatacaattttttagttcctccaaatgaggagggttttgtattat 1567272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 5825382 - 5825322
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatca 234  Q
    ||||||||||  ||||||| || ||||||||||||| |||||||| ||||||| ||||||||    
T  5825382 ccaaaaccctcccccaatacaaattttgagttcccc-aaatgagggggattttttattatca 5825322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 26481121 - 26481154
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactcca 175  Q
    |||||||||||||||||||||||||||| |||||    
T  26481121 agattgaatttgaaaaattcatataaaccctcca 26481154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 34914716 - 34914680
Alignment:
Q  144 attgaatttgaaaaattcatataaacactccaaaacc 180  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  34914716 attgaatttgaaaaattcatataaaccctccataacc 34914680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 40985118 - 40985174
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaat 242  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  40985118 ccaatacaatttttgagttcccccaaatgaggaggattttgtattatgaataaaaat 40985174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 79613 - 79703
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| |||||||| | |||||||||||  |||||||||||   |||||| ||||||| |||||||||||||||||||| ||| |||||||    
T  79613 agattaaatttgaagagttcatataaaccgtccaaaaccctcctccaatacaattttttagttcccccaaatgaggagggtttagtattat 79703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 25033430 - 25033371
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||| |||||| ||||||    
T  25033430 ccaaaaccctcccccaatacaatttttgagttcccccaaatgaggatgattttttattat 25033371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 299
Target Start/End: Complemental strand, 36906237 - 36906117
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaatataaatataaaattaaccccaaaagtcctctcctct 272  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||| ||||||| |||      ||  | || |||||||||| | |||| |||||||||     
T  36906237 ccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggattttttat------tacgagtaaaaaattaacctccaaagccctctcctcc 36906144  T
Q  273 caatttattctatttcttccacatgct 299  Q
    |||| | ||||||||||||||| ||||    
T  36906143 caatgtcttctatttcttccacttgct 36906117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 142 - 299
Target Start/End: Complemental strand, 34272606 - 34272445
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc----------tttcccaataaaatttttgagttcccccaaatgaggaggattttgtatta 231  Q
    |||||||||||||||||||||||||||| ||||| |||||          |  ||||||| |||||||||||| |||||||||||| ||||||| |||      
T  34272606 agattgaatttgaaaaattcatataaaccctccataaccccccaaaaccttcccccaatacaatttttgagtttccccaaatgagggggattttttat-- 34272509  T
Q  232 tcaatataaatataaaattaaccccaaaagtcctctcctctcaatttattctatttcttccacatgct 299  Q
        ||| | || || ||||||| | |||| |||||||||||||| | ||||||||||||||| ||||    
T  34272508 ----tatgagtaaaagattaacctccaaagccctctcctctcaatgtcttctatttcttccacttgct 34272445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 37659562 - 37659621
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||  ||||||| ||||||    
T  37659562 ccaaaacccttccccaatacaatttttgagttcccctaaatgagagggattttttattat 37659621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 10605153 - 10605237
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| || ||||||||||||| ||| ||||||||   |||||| ||| |||||||||| |||||| | || |||||||||||||    
T  10605153 aatttaaagaattcatataaactctcgaaaaccctcatccaatacaatatttgagttcctccaaattaagaagattttgtattat 10605237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 26772648 - 26772732
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||| ||||| ||| ||| ||||||||||||   |||||| ||||||| ||||||  ||||||| |||| |||||||||||    
T  26772648 aatttgaagaattcttattaaccctccaaaaccctcatccaatacaattttttagttccttcaaatgatgagggttttgtattat 26772732  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 1942043 - 1942082
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  1942043 agattgaatttgaaaaattcatataaaccctccataaccc 1942082  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 2474757 - 2474856
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc---------tttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||||||||||||||||| ||||| |||||         |  | ||||| ||||||| ||||| ||||||||||||||||||| ||||||    
T  2474757 agattgaatttgaaaaattcatataaaccctccataacccccaaaatcctcccacaatacaatttttaagttctcccaaatgaggaggattttttattat 2474856  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 4734486 - 4734525
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  4734486 agattgaatttgaaaaattcatataaaccctccataaccc 4734525  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 21173889 - 21173948
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||   |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  21173889 ccaaaaccctcctccaatataattttttagttcctccaaatgaggagggttttgtattat 21173948  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 28517270 - 28517337
Alignment:
Q  165 taaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| ||| ||||||||| |||| || |||||||||||  |||||| ||| ||||||||||||||||    
T  28517270 taaaccctctaaaacccttccccattacaatttttgagtatccccaagtgatgaggattttgtattat 28517337  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 31297338 - 31297377
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  31297338 agattgaatttgaaaaattcatataaaccctccataaccc 31297377  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 34304765 - 34304707
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||||||||  || |||| ||||||||||||||||||||||||| ||||||| ||||||    
T  34304765 ccaaaaccctcccctaatacaatttttgagttcccccaaatgagg-ggattttttattat 34304707  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 43733164 - 43733215
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattatcaata 237  Q
    |||||| ||||||| | ||||| |||||||||||||||||||||||| ||||    
T  43733164 ccaatacaattttttaattccctcaaatgaggaggattttgtattatgaata 43733215  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 23932602 - 23932648
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  23932602 ccaatacaattttttagttcctccaaatgaggagggttttgtattat 23932648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 28169914 - 28169868
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| | ||||||||||||||||||| || |||||||||||||||    
T  28169914 ccaatacattttttgagttcccccaaattagaaggattttgtattat 28169868  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 39405144 - 39405063
Alignment:
Q  148 aatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    |||||||||||||||||||||  || ||||| |  |||| |||| ||||||||||||||  ||||| ||||| ||||||||||    
T  39405144 aatttgaaaaattcatataaatccttcaaaatctcttcc-aatataatttttgagttccttcaaataaggagaattttgtatt 39405063  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 1839851 - 1839908
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtatt 230  Q
    ||||||||||   |||||| ||||||| |||||||||||||||||||| |||| ||||    
T  1839851 ccaaaaccctcctccaatacaatttttaagttcccccaaatgaggagggttttatatt 1839908  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 16024598 - 16024643
Alignment:
Q  187 caataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| ||||||||||||||| ||||| || |||||||||||||||    
T  16024598 caatacaatttttgagttcccacaaattagtaggattttgtattat 16024643  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 32158844 - 32158772
Alignment:
Q  154 aaaaattcatataaacactcc-aaaaccctttcccaataaaatttttgagttcccccaaatgaggaggatttt 225  Q
    |||||||||||||||| |||| ||||| |||  |||||| ||| ||| |||||||||||||||| ||| ||||    
T  32158844 aaaaattcatataaaccctcccaaaactcttctccaatacaatattttagttcccccaaatgagtagggtttt 32158772  T

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Target: scaffold0036 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 82877 - 82787
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||||||||||| | ||||||||||| |||||||| | |   |||||| |||||| |||||||| ||||| ||||||||||||||||||    
T  82877 agattgaatttgaagagttcatataaaccctccaaaatcatcctccaatacaattttggagttccctcaaattaggaggattttgtattat 82787  T

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Target: scaffold0028 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 35445 - 35484
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccc 181  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  35445 agattgaatttgaaaaattcatataaaccctccataaccc 35484  T

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Target: scaffold0991 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 3330 - 3240
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    ||||| || ||||| ||||| ||||||| ||| ||||| |||  | |||| ||||||| |  | |||||||||||||||||||||||||||    
T  3330 agattaaaattgaagaattcgtataaaccctctaaaactcttctctaatacaattttttaagttccccaaatgaggaggattttgtattat 3240  T

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Target: scaffold0136 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 2067 - 2113
Alignment:
Q  186 ccaataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||||| ||||||| |||||| ||||||||||||| |||||||||||    
T  2067 ccaatacaatttttcagttcctccaaatgaggagggttttgtattat 2113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 90875 - 90961
Alignment:
Q  142 agattgaatttgaaaaattcatataaacactccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggattttgta 228  Q
    ||||| |||||||| |||||||||||||  |||||||||||   |||||| ||||||| | ||  ||| |||||||||| |||||||    
T  90875 agattaaatttgaagaattcatataaaccatccaaaaccctcctccaatacaattttttaattatccccaatgaggagggttttgta 90961  T

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Target: scaffold0717 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 1628 - 1576
Alignment:
Q  173 ccaaaaccctttcccaataaaatttttgagttcccccaaatgaggaggatttt 225  Q
    ||||||||||  ||||||| |||||||||||||| ||| |||||| |||||||    
T  1628 ccaaaaccctcccccaatacaatttttgagttcctccatatgagggggatttt 1576  T

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Target: scaffold0128 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 26414 - 26370
Alignment:
Q  188 aataaaatttttgagttcccccaaatgaggaggattttgtattat 232  Q
    |||| ||||||| |||||| ||||||||||||| |||||||||||    
T  26414 aatacaattttttagttcctccaaatgaggagggttttgtattat 26370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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