View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0938_high_14 (Length: 257)

Name: NF0938_high_14
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0938_high_14
NF0938_high_14
[»] chr8 (11 HSPs)
chr8 (1-246)||(43270717-43270964)
chr8 (1-246)||(17699745-17699992)
chr8 (1-246)||(20824560-20824811)
chr8 (1-246)||(13879115-13879363)
chr8 (1-246)||(25090651-25090899)
chr8 (39-246)||(42177180-42177386)
chr8 (1-201)||(2170606-2170803)
chr8 (143-246)||(8300212-8300315)
chr8 (126-246)||(9922993-9923113)
chr8 (1-54)||(13200329-13200383)
chr8 (158-246)||(32266986-32267074)
[»] chr2 (8 HSPs)
chr2 (1-246)||(14440010-14440256)
chr2 (1-246)||(12645800-12646048)
chr2 (1-221)||(40176932-40177155)
chr2 (2-246)||(28252985-28253232)
chr2 (2-77)||(38604178-38604254)
chr2 (176-231)||(33515850-33515905)
chr2 (2-77)||(41207281-41207357)
chr2 (13-77)||(17764757-17764822)
[»] chr7 (7 HSPs)
chr7 (1-246)||(37255022-37255270)
chr7 (2-246)||(31422869-31423114)
chr7 (1-230)||(25619729-25619961)
chr7 (143-246)||(4937756-4937859)
chr7 (160-246)||(11276876-11276962)
chr7 (158-246)||(29968398-29968486)
chr7 (143-246)||(17721044-17721147)
[»] chr6 (8 HSPs)
chr6 (1-246)||(10576878-10577125)
chr6 (1-246)||(17573284-17573531)
chr6 (1-246)||(17605962-17606210)
chr6 (1-246)||(20882661-20882909)
chr6 (1-246)||(21629735-21629983)
chr6 (12-225)||(15958462-15958678)
chr6 (12-231)||(14372634-14372856)
chr6 (2-197)||(33185700-33185898)
[»] chr3 (14 HSPs)
chr3 (7-246)||(12341883-12342124)
chr3 (1-246)||(19890942-19891189)
chr3 (1-246)||(48569667-48569915)
chr3 (11-246)||(15312855-15313094)
chr3 (12-246)||(17097505-17097741)
chr3 (39-216)||(29523379-29523558)
chr3 (106-246)||(16179317-16179459)
chr3 (142-246)||(2364685-2364789)
chr3 (143-246)||(10323199-10323302)
chr3 (1-44)||(29523578-29523621)
chr3 (2-163)||(962874-963038)
chr3 (143-246)||(19919857-19919960)
chr3 (125-246)||(34332443-34332564)
chr3 (3-36)||(40415639-40415672)
[»] chr1 (7 HSPs)
chr1 (1-246)||(43388631-43388877)
chr1 (1-246)||(47622705-47622953)
chr1 (4-76)||(16917608-16917682)
chr1 (143-246)||(6051012-6051115)
chr1 (143-246)||(35541458-35541561)
chr1 (125-246)||(11908733-11908854)
chr1 (2-63)||(2491477-2491539)
[»] chr5 (15 HSPs)
chr5 (1-246)||(25857052-25857300)
chr5 (1-244)||(8299812-8300058)
chr5 (50-246)||(10777098-10777296)
chr5 (1-246)||(27795747-27795996)
chr5 (126-246)||(31641903-31642023)
chr5 (143-246)||(30731942-30732045)
chr5 (125-246)||(12825590-12825711)
chr5 (158-246)||(23238807-23238895)
chr5 (2-246)||(42928396-42928643)
chr5 (1-44)||(10777029-10777072)
chr5 (2-165)||(33169923-33170089)
chr5 (143-246)||(42514129-42514232)
chr5 (126-246)||(28535303-28535423)
chr5 (143-246)||(35983419-35983522)
chr5 (158-246)||(27116801-27116889)
[»] chr4 (13 HSPs)
chr4 (1-246)||(2821662-2821910)
chr4 (1-246)||(54482787-54483035)
chr4 (1-246)||(48312359-48312606)
chr4 (28-247)||(55725333-55725555)
chr4 (17-246)||(5789720-5789952)
chr4 (1-246)||(11586826-11587074)
chr4 (2-81)||(48242642-48242722)
chr4 (143-246)||(23642219-23642322)
chr4 (143-246)||(47419213-47419316)
chr4 (158-246)||(19755691-19755779)
chr4 (158-246)||(19784027-19784115)
chr4 (158-244)||(15740645-15740730)
chr4 (158-246)||(1828168-1828256)
[»] scaffold0034 (1 HSPs)
scaffold0034 (143-246)||(105471-105574)
[»] scaffold0472 (1 HSPs)
scaffold0472 (146-246)||(3664-3764)
[»] scaffold1350 (1 HSPs)
scaffold1350 (191-246)||(1-56)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 43270717 - 43270964
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagag 100  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43270717 ctccttccatacccataaacgacgacgccactgccatgccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgacag 43270816  T
Q  101 ctaaatcatatagccgtctaaaa--cacacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcct 198  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43270817 ctaaatcatatagccgtctaaaacgcacacacaacggaacactaccacaccaacagtctggccaaaaatcggtatcggctccatcccctaccctcctcct 43270916  T
Q  199 aacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  43270917 aacacaacctgcaaaccagccctccccaccctcgcctatcccatctct 43270964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 17699745 - 17699992
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgcccccc-accatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| ||||| |||||||||| ||||  ||| | |||||||| |    
T  17699745 ctcctcccatacccataaacgacgacgccactgccacgcccccccatcaacctccacccc-aacaaaaacatgttccgcaccgaaataattttattgaca 17699843  T
Q  100 gctaaatcatatagccgtctaaaac--acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    | ||||||||| ||||| |||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  17699844 gttaaatcataaagccgcctaaaacgcacacacaacggaacactaccacaccaacaatctcgccaaaaatcagtatcggctccatcccccaccctcctcc 17699943  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||    
T  17699944 taacacaacctgcaaaccagccctccccaccctcacctatcccatctct 17699992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 20824560 - 20824811
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgccccccacc-atc---ctccacccccaacaagaacatgttcctcaccataattactttattg 96  Q
    |||||||||||||||||||||||||||||||| ||||||||||| || |||   ||||||||||||||| |||||||||  ||   |||| |||||||||    
T  20824560 ctcctcccatacccataaacgacgacgccactaccacgccccccccccatctccctccacccccaacaaaaacatgttctgcattgtaataactttattg 20824659  T
Q  97 agagctaaatcatatagccgtctaaaac--acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcc 194  Q
    | |||||||||||| ||||| |||||||  ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||    
T  20824660 acagctaaatcataaagccgcctaaaacgcacacacaacggaacactaccacaccaacaatcacgccaaaaatcggtatcagctccatcccccaccctcc 20824759  T
Q  195 tcctaacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| |||||||    
T  20824760 tcctaacacaacctgaaaaccagccctccccaccctcacctatcccatctct 20824811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 13879363 - 13879115
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgc-cccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    ||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | |||  ||||| || |    
T  13879363 ctcctcccacacccataaccggcgacgccactgccacgctcccccaccatcctccaccccgaacaagaacatgttcctcaccgtgattgatttatcgata 13879264  T
Q  100 gctaaatcatatagccgtctaaaacac--acacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||| ||||| || || ||||| | |  ||||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||| ||||||||||    
T  13879263 gctaagtcataaagacgcctaaagcgctcacacaacggaacactaccacaccaacaatctcgccaaaaatcagtatcagcttcatcccccaccctcctcc 13879164  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||| |  ||||||| ||||| ||||||||||||||| |||||||    
T  13879163 taacacaatccacaaaccaaccctctccaccctcgcctatcccatctct 13879115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 25090651 - 25090899
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgc-cccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    ||||||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||  |||||||       
T  25090651 ctcctcccacaccaataaacggcgacgccactgccacgctcccccaccatcctccacccccaacaagaacatgttcctcaccgtgattgatttattggtg 25090750  T
Q  100 gctaaatcatatagccgtctaaaacac--acacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    | ||| ||| | || || ||||| | |  ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||    
T  25090751 gttaagtcaaaaagtcgcctaaagcgctcacacaacggaacactaccacaccaacaatctcgccaaaaatcagtatctgctccatcccccaccctcctcc 25090850  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||| | | |||||| ||||  ||||||||||||||| |||||||    
T  25090851 taacacaatccgtaaaccaaccctttccaccctcgcctatcccatctct 25090899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 39 - 246
Target Start/End: Complemental strand, 42177386 - 42177180
Alignment:
Q  39 ccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcatatagccgtctaaaacac--acacaacgga 136  Q
    |||||| ||||||||||||| |||||||||||||||||||||| | ||||||||||||  ||||| |||||||||||| ||||| | |  ||||| || |    
T  42177386 cccccccccatcctccaccctcaacaagaacatgttcctcaccgtgattactttattggcagctagatcatatagccgcctaaatcgctcacacagcgaa 42177287  T
Q  137 acactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgccta 236  Q
    ||||||||||||||||| ||||||||||||||| | ||||| |||||||| |||||||||||||||||||| ||||||||    ||||||||||||||||    
T  42177286 acactaccacaccaacaatctcgccaaaaatcgatttcggccccatcccccaccctcctcctaacacaacccgcaaacca---atccccaccctcgccta 42177190  T
Q  237 tctcatctct 246  Q
    || |||||||    
T  42177189 tcccatctct 42177180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 2170606 - 2170803
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagag 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||     || |||| ||||| |||||||||| |||| ||||||||||||||| ||    
T  2170606 ctcctcccatacccataaacgacgacgccactgtcacgccccccccc-----ccccccctaacaaaaacatgttccgcaccgtaattactttattgacag 2170700  T
Q  101 ctaaatcatatagccgtctaaaacacacaca--acggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcct 198  Q
     ||||||||| ||||| ||||||| ||||||  |||||||||||||||||||||| |||||| |||||||||||||| ||| |||||| |||||||||||    
T  2170701 ttaaatcataaagccgcctaaaacgcacacataacggaacactaccacaccaacaatctcgctaaaaatcggtatcgactctatcccccaccctcctcct 2170800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 8300212 - 8300315
Alignment:
Q  143 ccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcat 242  Q
    ||||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||||    ||||||| ||||| |||||||| |||||| |||    
T  8300212 ccacaccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctcgccaccctcacctatcccat 8300311  T
Q  243 ctct 246  Q
    ||||    
T  8300312 ctct 8300315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 9922993 - 9923113
Alignment:
Q  126 cacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctcccc 225  Q
    ||||||| ||||||   ||||||||||| || ||||||||||| || || || || || || ||||||||||||||||||    ||||||| ||||| ||    
T  9922993 cacacaatggaacatctccacaccaacaatcccgccaaaaatctgtctctgcaccgtctcccaccctcctcctaacacaagacccaaaccaaccctctcc 9923092  T
Q  226 accctcgcctatctcatctct 246  Q
    |||||| |||||| |||||||    
T  9923093 accctcacctatcccatctct 9923113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13200329 - 13200383
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgc-cccccaccatcctcc 54  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||    
T  13200329 ctcctcccacacccataaacgacgtcgccactgccacgctcccccaccctcctcc 13200383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 32266986 - 32267074
Alignment:
Q  158 cgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||||||||| ||||| || ||||| || ||| ||||||||||||||    ||||||| ||||| |||||||| |||||| |||||||    
T  32266986 cgccaaaaatcagtatccgcaccatctcccaccttcctcctaacacaagacccaaaccacccctctccaccctcacctatcccatctct 32267074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 14440010 - 14440256
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccac-gccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| |    
T  14440010 ctcctcccatacccataaacgacgacgccactgcccccnccccccaccatcctccacccccaacaaaaacatgttccgcaccgtaattactttattgaca 14440109  T
Q  100 gctaaatcatatagccgtctaaaa--cacacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||    
T  14440110 gctaaatcatatagccgcctaaaacgcacacacaacggaacactaccacaccaacaatctcgccaaatatcggtatcggctccatccctcaccctcctcc 14440209  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
      ||||||||||||||||||||||||||||||||||||||| |||||||    
T  14440210 --acacaacctgcaaaccagccctccccaccctcgcctatcccatctct 14440256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 12645800 - 12646048
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgcccc-ccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    ||||| ||| |||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||  | ||||||||||||| |    
T  12645800 ctccttccacacccataaacgacgtcgccactgccacgctcctccaccctcctccacccccaacaagaacatgttccttactgtgattactttattgaca 12645899  T
Q  100 gctaaatcatatagccgtctaaaacac--acacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||| |||||||| || ||||| | |  |||||| |||||||||||||||||||| |||||||||||||| ||   ||||||||| || ||||||||||    
T  12645900 gctaagtcatatagtcgcctaaagcgctcacacaaaggaacactaccacaccaacaatctcgccaaaaatctgttgtggctccatctcccaccctcctcc 12645999  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||| | ||||||||  |||||||||||||||||||| |||||||    
T  12646000 taacacaatccgcaaaccaatcctccccaccctcgcctatcccatctct 12646048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40176932 - 40177155
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgc-cccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    ||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | |||  ||||||||      
T  40176932 ctcctcccacacccataaccggcgacgccactgccacgctcccccaccatcctccacccccaacaagaacatcttcctcaccgtgattgatttattgatg 40177031  T
Q  100 gctaaatcatatagccgtctaaaaca--cacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||| ||||| || || ||||| |   |||||||||||||||||||||||||||| |||| |||||||||||||||  |||||||||| ||||||||||    
T  40177032 gctaagtcataaagtcgcctaaagcgttcacacaacggaacactaccacaccaacaatctcaccaaaaatcggtatcaactccatcccccaccctcctcc 40177131  T
Q  198 taacacaacctgcaaaccagccct 221  Q
    |||||||| | |||||||| ||||    
T  40177132 taacacaatccgcaaaccaaccct 40177155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 28252985 - 28253232
Alignment:
Q  2 tcctcccatacccataaacgacgacgccactgccacgcccc-ccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagag 100  Q
    ||||||||| ||||||| ||||||||||||| ||||||| | |||||| |||||||||||||||| |||||  |||| ||| | |||||||| ||||  |    
T  28252985 tcctcccatgcccataaccgacgacgccactaccacgcctcaccaccaacctccacccccaacaaaaacatagtcctaaccgtgattactttgttgacgg 28253084  T
Q  101 ctaaatcatatagccgtctaaaacacacac--aacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcct 198  Q
    | |||||||||||||||||||| | | |||  ||| |||||  |||||||| ||| || ||||||||||| |||||||  |||||||| |||||||||||    
T  28253085 ccaaatcatatagccgtctaaagcgctcacgaaacagaacatcaccacaccgacaatcccgccaaaaatcagtatcggaaccatcccccaccctcctcct 28253184  T
Q  199 aacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||||| | | |||||| ||||||||||||||| ||||| |||||||    
T  28253185 aacacaaaccgaaaaccaaccctccccaccctcgtctatcccatctct 28253232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 38604254 - 38604178
Alignment:
Q  2 tcctcccatacccataaacgacgacgccactgccacgc-cccccaccatcctccacccccaacaagaacatgttcct 77  Q
    |||||||| |||||||||| |||  ||||||||||||| |||||||||||||||||||||||||||| ||| |||||    
T  38604254 tcctcccacacccataaactacggtgccactgccacgcacccccaccatcctccacccccaacaagagcatattcct 38604178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 33515905 - 33515850
Alignment:
Q  176 gctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctc 231  Q
    ||||||||||| |||||||||||||||||| | | |||||| ||||||||||||||    
T  33515905 gctccatcccccaccctcctcctaacacaatccgtaaaccaaccctccccaccctc 33515850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 41207281 - 41207357
Alignment:
Q  2 tcctcccatacccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcct 77  Q
    ||||||||| |||| || ||||||||||| ||| ||||| |||||||  | |||||||||||||||||||| |||||    
T  41207281 tcctcccatgcccacaaccgacgacgccattgcaacgcctccccacccacatccacccccaacaagaacatattcct 41207357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 17764822 - 17764757
Alignment:
Q  13 ccataaacgacgacgccactgccacg-ccccccaccatcctccacccccaacaagaacatgttcct 77  Q
    |||||| ||||||||||||||||||| | |||||||  | |||||||| ||||||||||| |||||    
T  17764822 ccataagcgacgacgccactgccacgtctccccaccgacatccaccccaaacaagaacatattcct 17764757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 37255022 - 37255270
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccaccccc-aacaagaacatgttcctcaccataattactttattgaga 99  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| |    
T  37255022 ctcctcccacacccataaccgacggcgccactgccacgccccccaccatcctccaccccccaacaagaacatgttcctcaccgtgattactttattgaca 37255121  T
Q  100 gctaaatcatatagccgtctaaaacac--acacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||||||||||||||| ||||| | |  ||||| |||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  37255122 gctaaatcatatagccgcctaaagcgctcacacagcggaacactaccgcaccaacaatctcgccaaaaatcggtttcggctccatcccccaccctcctcc 37255221  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||||| |||||||| | |||| ||||||||||||||||||||||    
T  37255222 taacacaacccgcaaaccaactctcctcaccctcgcctatctcatctct 37255270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 31422869 - 31423114
Alignment:
Q  2 tcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagc 101  Q
    |||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||||||  | ||||||||||||| |||    
T  31422869 tcctcccacacccataaacgacgatgccactgccacgcccac-accatcctccacccccaacaagagcatgttcctcactgtgattactttattgacagc 31422967  T
Q  102 taaatcatatagccgtctaaaacac--acacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctccta 199  Q
    ||| ||||||||||| ||||| | |  |||||||||||| |||||||||||||| |||||||||||||| || ||   ||||||| | ||||||||||||    
T  31422968 taagtcatatagccgcctaaatcgctcacacaacggaactctaccacaccaacaatctcgccaaaaatccgtttcaattccatcctccaccctcctccta 31423067  T
Q  200 acacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||| |||||||| ||||||||||||||||||||| |||||||    
T  31423068 acacaacccgcaaaccatccctccccaccctcgcctatcccatctct 31423114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 25619729 - 25619961
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagag 100  Q
    ||||||||| |||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |     
T  25619729 ctcctcccacacccataaacgatgccgccactaccacgccccccaccatcctccacccccaacaagaacatgttcctcaccgtgattactttattgacaa 25619828  T
Q  101 ctaaatcatatagccgtctaaaac--acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccat-cccctaccctcctcc 197  Q
    ||| |||||||||||| ||||| |   |||||| ||||||||||  ||||||||| ||||||| ||||||| | |||||||||| |||| ||||| ||||    
T  25619829 ctagatcatatagccgcctaaatcgttcacacagcggaacactataacaccaacaatctcgcccaaaatcgatttcggctccatccccccacccttctcc 25619928  T
Q  198 taacacaacctgcaaaccagccctccccaccct 230  Q
    |||||||| | |||||||| || ||| ||||||    
T  25619929 taacacaaaccgcaaaccaaccttcctcaccct 25619961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 4937859 - 4937756
Alignment:
Q  143 ccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcat 242  Q
    ||||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||||    ||||||| ||||| |||||||| |||||| |||    
T  4937859 ccacaccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccat 4937760  T
Q  243 ctct 246  Q
    ||||    
T  4937759 ctct 4937756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 11276962 - 11276876
Alignment:
Q  160 ccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||||||||||||| || ||||| || ||||||||||||||||||    ||||||| ||||| |||||||| |||||| |||||||    
T  11276962 ccaaaaatcggtatctgcaccatctcccaccctcctcctaacacaagacccaaaccacccctctccaccctcacctatcccatctct 11276876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 29968398 - 29968486
Alignment:
Q  158 cgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||||||||||||||| || ||||| || ||| ||||||||||||||    |||| || ||||| |||||||| |||||| |||||||    
T  29968398 cgccaaaaatcggtatccgcaccatctcccaccttcctcctaacacaagacccaaatcatccctctccaccctcacctatcccatctct 29968486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 17721044 - 17721147
Alignment:
Q  143 ccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcat 242  Q
    ||||||||||| || | ||||||||| || || || || || || ||||||||||||||||||    ||||||| ||||| |||||||| |||||| |||    
T  17721044 ccacaccaacaatcccaccaaaaatctgtctctgcaccgtctcccaccctcctcctaacacaagacccaaaccaaccctctccaccctcacctatcccat 17721143  T
Q  243 ctct 246  Q
    ||||    
T  17721144 ctct 17721147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 10577125 - 10576878
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||| |||  |||| |||||||||| ||    
T  10577125 ctcctcccatacccataaacgacgacgccactgccacgccccccatcaccctccacccccagcaaaaacatgttccgcactgtaataactttattgacag 10577026  T
Q  101 ctaaatcatatagccgtctaaaac--acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcct 198  Q
     ||||||||| ||||| |||||||  ||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| |||||||||||    
T  10577025 ttaaatcataaagccgcctaaaacgaacacacaacggaacactaccacaccaacaatctcaccaaaaatcggtatcagctccatcccccaccctcctcct 10576926  T
Q  199 aacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||||||||  ||||||||||||||||||||| |||||| |||||||    
T  10576925 aacacaacctataaaccagccctccccaccctcacctatcccatctct 10576878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 17573531 - 17573284
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagag 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |  |||||||||||||||| |||||||||| ||   |||| |||||||||| ||    
T  17573531 ctcctcccatacccataaacgacgacgccactgccacaccccccatctccctccacccccaacaaaaacatgttccgcattgtaataactttattgacag 17573432  T
Q  101 ctaaatcatatagccgtctaaaac--acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcct 198  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||    
T  17573431 ctaaatcataaagccgcctaaaacgcacacacaacggaacactaccacaccaacaatcgcgccaaaaatcggtatcagctccatcccccaccctcctcct 17573332  T
Q  199 aacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||||||||| ||||||||||||||||||||| |||||| |||||||    
T  17573331 aacacaacctgaaaaccagccctccccaccctcacctatcccatctct 17573284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 17606210 - 17605962
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgcccccc-accatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    |||||||||||||||||||||||  || |||||||||||||||| | || |||||||||||||||| |||||||||| |||   ||| |||||||||| |    
T  17606210 ctcctcccatacccataaacgacaccgtcactgccacgcccccccatcaccctccacccccaacaaaaacatgttccgcactgaaataactttattgaca 17606111  T
Q  100 gctaaatcatatagccgtctaaaac--acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||||||||| ||||| |||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||    
T  17606110 gctaaatcataaagccgcctaaaacgcacacacaacggaacactaccacaccaacaatctcgccaaaaatcggtatcagctccatcccccaccctcctcc 17606011  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||||||| ||||||||||||||||||||| |||||| |||||||    
T  17606010 taacacaacctgtaaaccagccctccccaccctcacctatcccatctct 17605962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 20882909 - 20882661
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccc-caacaagaacatgttcctcaccataattactttattgaga 99  Q
    |||||||||  ||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||| | |    
T  20882909 ctcctcccacgcccataaacgacgacgccaatgccacaccccccaccatcctccacctctcaacaagaacatgttcctcacaatgattactttattaaca 20882810  T
Q  100 gctaaatcatatagccgtctaaaacac--acacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
     |||||||||||||||| ||||| | |  ||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||||||||||    
T  20882809 actaaatcatatagccgcctaaagcgctcacacagcggaacactaccacaccaacaatctcgccaaaaattggtttcggctccatcccccaccctcctcc 20882710  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  20882709 taacacaacatgcaaaccaaccctccccaccctcgcctatcccatctct 20882661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 21629983 - 21629735
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgcccccc-accatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    |||||||||||||||||||||||  || |||||||||||||||| | || |||||||||||||||| |||||||||| |||   ||| |||||||||| |    
T  21629983 ctcctcccatacccataaacgacaccgtcactgccacgcccccccatcaccctccacccccaacaaaaacatgttccgcactgaaataactttattgaca 21629884  T
Q  100 gctaaatcatatagccgtctaaaac--acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||||||||| ||||| |||||||  ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||    
T  21629883 gctaaatcataaagccgcctaaaacgcacacacaacggaacactaccacaccaacaatctcgccaaaaatcgatatcagctccatcccccaccctcctcc 21629784  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||||||| ||||||||||||||||||||| | |||| |||||||    
T  21629783 taacacaacctgaaaaccagccctccccaccctcacttatcccatctct 21629735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 15958678 - 15958462
Alignment:
Q  12 cccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcata 110  Q
    ||||||||||||||||| ||||||||||| |||||||| | |||||| ||| ||||||||| | ||| ||  | |||||||| |||| ||| ||||||||    
T  15958678 cccataaacgacgacgcaactgccacgcctccccaccaacatccacctccagcaagaacatatgcctaactgtgattactttgttgacagccaaatcata 15958579  T
Q  111 tagccgtctaaaa--cacacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacct 208  Q
    |||||| |||||   | |||| ||||||||| ||||||||||||| || ||||||||||| || |||| ||||||||| |||||||||||||||||| |     
T  15958578 tagccgactaaagagctcacaaaacggaacattaccacaccaacaatcacgccaaaaatcagtttcggatccatcccccaccctcctcctaacacaatcc 15958479  T
Q  209 gcaaaccagccctcccc 225  Q
    | |||||| ||||||||    
T  15958478 gaaaaccaaccctcccc 15958462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 14372856 - 14372634
Alignment:
Q  12 cccataaacgacgacgccactgccacgcccc-ccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcata 110  Q
    ||||||| ||| ||||||||| ||||||| | |||||| ||||||||||||| || ||||| || || ||| | |||||||| ||||  || ||||||||    
T  14372856 cccataaccgatgacgccacttccacgcctcaccaccaacctccacccccaataaaaacatatttctaaccgtgattactttgttgacggccaaatcata 14372757  T
Q  111 tagccgtctaaaacacacac--aacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacct 208  Q
    || |||||||||   | |||  ||||||||| ||||||||||||| || ||||||||||| |||||||  |||||||| ||||||||||| ||||||||     
T  14372756 taaccgtctaaagtgctcacgaaacggaacattaccacaccaacaatcccgccaaaaatcagtatcggaaccatcccccaccctcctcctgacacaaccc 14372657  T
Q  209 gcaaaccagccctccccaccctc 231  Q
    | |||||| ||||||||||||||    
T  14372656 gaaaaccaaccctccccaccctc 14372634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 33185700 - 33185898
Alignment:
Q  2 tcctcccatacccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagag 100  Q
    |||||||||  ||| ||||| ||||| |||||||||||| ||||||||||||||   ||||||| || ||||||||| ||| | |||||||| |||| ||    
T  33185700 tcctcccatgtccacaaacggcgacgtcactgccacgcctccccaccatcctcccaacccaacaggagcatgttcctaaccgtgattactttgttgacag 33185799  T
Q  101 ctaaatcatatagccgtctaaaacacacac--aacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
      || ||||| || || | | | | | |||  || ||||||  |||||||||||| || ||||||||||| || || || |||||||| ||||||||||    
T  33185800 tcaagtcataaagacgacgagagcgctcacggaaaggaacatcaccacaccaacaatcacgccaaaaatcagtttcagccccatcccccaccctcctcc 33185898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 12342124 - 12341883
Alignment:
Q  7 ccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaat 106  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| |||||||||  |||  |||| |||||| ||| ||||||||    
T  12342124 ccatacccataaacgacgacgccactgccacgccccccatcaccctccacacccaacaaaaacatgttctgcactgtaataactttagtgacagctaaat 12342025  T
Q  107 catatagccgtctaaaac--acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacaca 204  Q
    |||| ||| | |||||||  ||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||| |||||||    
T  12342024 cataaagctgcctaaaacgcacacacaacggaacactaccacaccaacaatctcgccaaaaattggtatcagctccatcccccaccctcctcttaacaca 12341925  T
Q  205 acctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||| ||||||||||||||||||||| |||||| |||||||    
T  12341924 acctgtaaaccagccctccccaccctcacctatcccatctct 12341883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 19890942 - 19891189
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagag 100  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||| ||    
T  19890942 ctcctcccacacccataaatgacgtcgccactgccacgccccccaccatcctccacccccaaccagaacatgttcctcacaatgattactttattgacag 19891041  T
Q  101 ctaaatcatatagccgtctaaa--acacacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcct 198  Q
    ||| ||| |||||||| |||||   | |||||| ||||||||||||||||||||| |||| | |||||||| | |||||||||||||| |||||||||||    
T  19891042 ctagatcgtatagccgcctaaatcgcgcacacagcggaacactaccacaccaacaatctcacaaaaaatcgatttcggctccatcccccaccctcctcct 19891141  T
Q  199 aacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||||||||||||| || ||| ||||||||| |||| |||||||    
T  19891142 aacacaacctgcaaaccaaccttcctcaccctcgcttatcccatctct 19891189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 48569915 - 48569667
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgc-cccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| | ||| |||||||||      
T  48569915 ctcctcccacacccataaacggcgacgccactgccacgctcccccaccatcctcaacccccaacaagaacatgttccttaccgtgattgctttattgacg 48569816  T
Q  100 gctaaatcatatagccgtctaaaacac--acacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||| ||||| || ||  |||| | |  ||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||    
T  48569815 gctaagtcataaagacgcataaagcgctcacacaacagaacactaccacaccaacaatcttgccaaaaatcggtatcagctccatcccccaccctcctcc 48569716  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||| |  ||||||| |||||||||||||| |||||| |||||||    
T  48569715 taacacaatccacaaaccaaccctccccaccctcacctatcccatctct 48569667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 15312855 - 15313094
Alignment:
Q  11 acccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcat 109  Q
    ||||| |||||||| ||||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||| | | |||||| |||| ||| || ||||    
T  15312855 acccacaaacgacggcgccactgccacgcctcccctccaacctccacacccaacaagaacatgttccttaccgtgactactttgttgacagccaattcat 15312954  T
Q  110 atagccgtctaaaacac--acacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccc-tcctcctaacacaac 206  Q
    |||| |||||||||| |  ||||||||||||| ||||||||||||  || | ||||||||| ||||||||||||||||| |||| | |||||||||||      
T  15312955 atagtcgtctaaaacgctcacacaacggaacattaccacaccaactatcacaccaaaaatcagtatcggctccatcccccaccctttctcctaacacacg 15313054  T
Q  207 ctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
      |||||||| |||||||||||||||||||||||||||||    
T  15313055 acgcaaaccatccctccccaccctcgcctatctcatctct 15313094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 17097741 - 17097505
Alignment:
Q  12 cccataaacgacgacgccactgccacgccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcatat 111  Q
    |||| |||||||| ||||||| ||||||||||  ||| ||||||  |||||||||||||||||||| ||| | | |||||| |||| ||| |||||||||    
T  17097741 cccacaaacgacggcgccactaccacgccccctgccaacctccaaacccaacaagaacatgttccttaccgtgactactttgttgacagccaaatcatat 17097642  T
Q  112 agccgtctaaaa--cacacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctg 209  Q
    ||||||||||||  | |||||||||||||| ||||||||||||| || ||||||||||| ||||| ||||| ||||| ||||  |||||||||||         
T  17097641 agccgtctaaaacgctcacacaacggaacattaccacaccaacaatcacgccaaaaatcagtatcagctccgtcccccacccgtctcctaacacacgaca 17097542  T
Q  210 caaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  17097541 caaaccacccctccccaccctcgcctatcccatctct 17097505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 29523558 - 29523379
Alignment:
Q  39 ccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcatatagccgtctaaaac--acacacaacgga 136  Q
    ||||||| || |||||||||||||||| |||||||||| |||  |||| |||||| ||| |||||||||||| ||||| |||||||  ||||||||||||    
T  29523558 ccccccatcaccctccacccccaacaaaaacatgttccgcactgtaataactttagtgacagctaaatcataaagccgcctaaaacgcacacacaacgga 29523459  T
Q  137 acactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaacca 216  Q
     |||||||||||||||| |||||| | ||||||||||| ||||||||||| ||||||||| ||||||||| || ||||||    
T  29523458 gcactaccacaccaacaatctcgcaacaaatcggtatcagctccatcccccaccctcctcttaacacaacatgtaaacca 29523379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 246
Target Start/End: Original strand, 16179317 - 16179459
Alignment:
Q  106 tcatatagccgtctaaaacaca--cacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacac 203  Q
    |||||||| |||||||||| ||  ||||| |||||| | ||| ||||||  || ||||||||||| |||| || ||||||||| |||||||| |||||||    
T  16179317 tcatatagacgtctaaaacgcaaacacaaaggaacaattccataccaactatcgcgccaaaaatcagtattggatccatcccccaccctcctactaacac 16179416  T
Q  204 aacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |     ||||||| | ||||||||||||||||||| |||||||    
T  16179417 acgacacaaaccatctctccccaccctcgcctatcccatctct 16179459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 2364685 - 2364789
Alignment:
Q  142 accacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctca 241  Q
    |||||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||||    ||||||| ||||| |||||||| |||||| ||    
T  2364685 accacaccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatccca 2364784  T
Q  242 tctct 246  Q
    |||||    
T  2364785 tctct 2364789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 10323302 - 10323199
Alignment:
Q  143 ccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcat 242  Q
    ||||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||||    ||||||| ||||| |||||||| |||||| |||    
T  10323302 ccacaccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccat 10323203  T
Q  243 ctct 246  Q
    ||||    
T  10323202 ctct 10323199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29523621 - 29523578
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgcccccc 44  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  29523621 ctcctcccatacccataaacaacgacgccactgccacgcccccc 29523578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 163
Target Start/End: Complemental strand, 963038 - 962874
Alignment:
Q  2 tcctcccatacccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagag 100  Q
    |||||||| ||||| || || |||||||||||||||||| |||||||| ||||||  ||||||  |||||||||||| | | | |  ||||| ||||  |    
T  963038 tcctcccaaacccacaagcggcgacgccactgccacgcccccccaccaacctccaaacccaactggaacatgttcctaatcgtgacaactttgttgactg 962939  T
Q  101 ctaaatcatatagccgtctaaa--acacacacaacggaacactaccacaccaacagtctcgccaa 163  Q
      |||||| | |||||||||||   |||||| ||||||||| | ||||||||||| || ||||||    
T  962938 tcaaatcaaaaagccgtctaaatcgcacacaaaacggaacatttccacaccaacaatcacgccaa 962874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 19919960 - 19919857
Alignment:
Q  143 ccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaa-cctgcaaaccagccctccccaccctcgcctatctca 241  Q
    |||||||| || || ||||||||||| ||||| || ||||| || ||||||||||||||||||  ||| |||||| ||||| || ||||| |||||| ||    
T  19919960 ccacaccagcaatcacgccaaaaatcagtatctgcaccatctcccaccctcctcctaacacaagtctg-aaaccaaccctcacctccctcacctatccca 19919862  T
Q  242 tctct 246  Q
    |||||    
T  19919861 tctct 19919857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 34332564 - 34332443
Alignment:
Q  125 acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccc 224  Q
    |||||||  |||||| | ||||||||||  || ||||||||||| |  || || ||||| || |||||||||||||||||     ||||||| ||||| |    
T  34332564 acacacagtggaacatttccacaccaacgatcacgccaaaaatctgagtctgcaccatctcccaccctcctcctaacacacgtcccaaaccatccctctc 34332465  T
Q  225 caccctcgcctatctcatctct 246  Q
    ||||||| |||||| |||||||    
T  34332464 caccctcacctatcccatctct 34332443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 40415639 - 40415672
Alignment:
Q  3 cctcccatacccataaacgacgacgccactgcca 36  Q
    |||||||| |||||||||||||||||||||||||    
T  40415639 cctcccatgcccataaacgacgacgccactgcca 40415672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 43388631 - 43388877
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgcccccc-accatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| | || |||||||||||||||| ||||||||||||||   ||| |||||| ||| |    
T  43388631 ctcctcccatacccataaacgacgacgtcactaccacgcccccccatcaccctccacccccaacaaaaacatgttcctcactgaaataactttagtgaca 43388730  T
Q  100 gctaaatcatatagccgtctaaaacacacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctccta 199  Q
    ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||| ||||||||||||    
T  43388731 gctaaatcataaagccgcctaaaacgcacacaacggaacactaccacaccaacaatctcgccaaaaatcagcatcagctccatcccccaccctcctccta 43388830  T
Q  200 acacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||||| || |||||||||||||||||| || |||||| |||||||    
T  43388831 acacaacttgtaaaccagccctccccaccatcacctatcccatctct 43388877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 47622953 - 47622705
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgcccc-ccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    |||||||||  ||||||| ||||||||||||| |||| || | |||||| |||||||||||||||| |||||  || | | | | |||||||| ||||      
T  47622953 ctcctcccacgcccataaccgacgacgccactaccacacctcaccaccaacctccacccccaacaaaaacatagtcataatcgtgattactttgttgacg 47622854  T
Q  100 gctaaatcatatagccgtctaaaacacacac--aacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    || |||| ||||||||||||||| | | |||  |||||||||  |||||||||||| || ||||||||||| |||||||  |||||||| ||||||||||    
T  47622853 gccaaattatatagccgtctaaagcgctcacgaaacggaacatcaccacaccaacaatcccgccaaaaatcagtatcggaaccatcccccaccctcctcc 47622754  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||| | | |||||| ||||||||| |||||  |||| |||||||    
T  47622753 taacacaatccgaaaaccaaccctccccatcctcgtttatcccatctct 47622705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 16917682 - 16917608
Alignment:
Q  4 ctcccatacccataaacgacgacgccactgccacgccccccaccat---cctccacccccaacaagaacatgttcc 76  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||| ||||||||||    
T  16917682 ctcccatacccataaacgacgacgccactgccacgcccccc-ccatctccctccacccccaacaaaaacatgttcc 16917608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 6051012 - 6051115
Alignment:
Q  143 ccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcat 242  Q
    ||||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||||    ||||||| ||||| |||||||| |||||| |||    
T  6051012 ccacaccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccat 6051111  T
Q  243 ctct 246  Q
    ||||    
T  6051112 ctct 6051115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 35541458 - 35541561
Alignment:
Q  143 ccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcat 242  Q
    ||||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||||    ||||||| ||||| |||||||| |||||| |||    
T  35541458 ccacaccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctcgccaccctcacctatcccat 35541557  T
Q  243 ctct 246  Q
    ||||    
T  35541558 ctct 35541561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 11908854 - 11908733
Alignment:
Q  125 acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccc 224  Q
    |||||||| ||||||   ||||||||||| || || |||||||| ||||| || ||||| || |||||||||||||||||     ||||||| ||||| |    
T  11908854 acacacaaaggaacatctccacaccaacaatcacgtcaaaaatcagtatctgcaccatctcccaccctcctcctaacacatgtcccaaaccaaccctctc 11908755  T
Q  225 caccctcgcctatctcatctct 246  Q
    ||||||| |||||| |||||||    
T  11908754 caccctcacctatcccatctct 11908733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 2491477 - 2491539
Alignment:
Q  2 tcctcccatacccataaacgacgacgccactgccacg-ccccccaccatcctccacccccaac 63  Q
    ||||||||  |||| |||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  2491477 tcctcccaagcccacaaacgacgacgccactgccacgcccccccaccagcctccacacccaac 2491539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 25857300 - 25857052
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgcccccc-accatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |  |||||||||||||||| || ||||||| |||  |||| || ||||||| |    
T  25857300 ctcctcccatacccataaacgacgacgccactgccacgcccccccatctccctccacccccaacaaaaatatgttccgcactgtaataacattattgaca 25857201  T
Q  100 gctaaatcatatagccgtctaaaac--acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||||||||| ||||| |||||||  ||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||    
T  25857200 gctaaatcataaagccgcctaaaacgcacacacaacggaacactgccacaccaacaatcgcgccaaaaatcggtatcagctccatcccccaccctcctcc 25857101  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||||||| |||||| |||||||||||||| |||||| |||||||    
T  25857100 taacacaacctgaaaaccatccctccccaccctcacctatcccatctct 25857052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 8300058 - 8299812
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgcccccc-accatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |  |||||||||||||||| |||||||||| |||  |||| || ||||||| |    
T  8300058 ctcctcccatacccataaacgacgacgccactgccacgcccccccatctccctccacccccaacaaaaacatgttccgcactgtaataacattattgaca 8299959  T
Q  100 gctaaatcatatagccgtctaaaac--acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||||||||| ||||| |||||||  |||||||| |||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||    
T  8299958 gctaaatcataaagccgcctaaaacgcacacacaatggaacactgccacaccaacaatcgcgccaaaaatcggtatcagctccatcccccaccctcctcc 8299859  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatct 244  Q
    |||||||||||| |||||| |||||||||||||| |||||| |||||    
T  8299858 taacacaacctgaaaaccatccctccccaccctcacctatcccatct 8299812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 10777098 - 10777296
Alignment:
Q  50 cctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcatatagccgtctaaaac--acacacaacggaacactaccaca 147  Q
    ||||||||||||||||||||||||||| |||| |||| | |||||||| |||||||||||| ||||| |||||||  |||||||||||||||||||||||    
T  10777098 cctccacccccaacaagaacatgttccgcaccgtaataattttattgacagctaaatcataaagccgcctaaaacgcacacacaacggaacactaccaca 10777197  T
Q  148 ccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||    
T  10777198 ccaacaatctcgccaaaaatcagtatcggctccatcccccaccctcctcctaacacaacctgcaaaccagccctccccaccctcacatatcccatctct 10777296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 27795747 - 27795996
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgc-cccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    ||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || | |||  ||||| || |    
T  27795747 ctcctcccacacccataatcggcgacgccactgccacgctcccccaccatcctccacccctaacaagaacatgttcctcgccgtgattgatttatggata 27795846  T
Q  100 gctaaatcatatagccgtctaaaacac--acacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||| ||||| || || ||||| | |  ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||    
T  27795847 gctaagtcataaagacgcctaaagcgctcacacaacggaacactaccacaccaacaatctcgccaaaaatcagtatcagctccatcccccaccctcctcc 27795946  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgc-ctatctcatctct 246  Q
    |||||||| |  ||||||| ||||| |||||||||| ||||| |||||||    
T  27795947 taacacaatccacaaaccaaccctctccaccctcgcgctatcccatctct 27795996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 31641903 - 31642023
Alignment:
Q  126 cacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctcccc 225  Q
    ||||||| |||||| | ||||||||||| || ||||||||||| ||||| || || || || ||||||||||||||||||    ||||||| ||||| ||    
T  31641903 cacacaaaggaacatttccacaccaacaatcccgccaaaaatctgtatctgcaccgtctcccaccctcctcctaacacaagacccaaaccaaccctctcc 31642002  T
Q  226 accctcgcctatctcatctct 246  Q
    |||||| |||||| |||||||    
T  31642003 accctcacctatcccatctct 31642023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 30732045 - 30731942
Alignment:
Q  143 ccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcat 242  Q
    ||||||||||| || ||||||||||| ||||| || ||||| || |||||||||||||||||     ||||||| ||||| |||||||| |||||| |||    
T  30732045 ccacaccaacaatcacgccaaaaatcagtatctgcaccatctcccaccctcctcctaacacatgtcccaaaccaaccctctccaccctcacctatcccat 30731946  T
Q  243 ctct 246  Q
    ||||    
T  30731945 ctct 30731942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 246
Target Start/End: Original strand, 12825590 - 12825711
Alignment:
Q  125 acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccc 224  Q
    |||||||| ||||||   |||| |||||| || ||||||||||| ||||| || ||||| || |||||||||||||||||     ||||||| ||||| |    
T  12825590 acacacaaaggaacatctccactccaacaatcacgccaaaaatcagtatctgcaccatctcccaccctcctcctaacacatgtcccaaaccaaccctctc 12825689  T
Q  225 caccctcgcctatctcatctct 246  Q
    ||||||| |||||| |||||||    
T  12825690 caccctcacctatcccatctct 12825711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 23238807 - 23238895
Alignment:
Q  158 cgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||||||||||||||| |  ||||| || ||||||||||||||||||    ||||||| ||||| |||||||| |||||| |||||||    
T  23238807 cgccaaaaatcggtatccgtaccatctcccaccctcctcctaacacaagacccaaaccacccctctccaccctcacctatcccatctct 23238895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 42928396 - 42928643
Alignment:
Q  2 tcctcccatacccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagag 100  Q
    ||||||||  |||| || || |||||||||||| ||||| |||||||  | ||| || ||||||||||||| ||||| ||  | |||  |||||| | ||    
T  42928396 tcctcccaagcccacaaccgccgacgccactgcaacgcctccccacccacatccgcctccaacaagaacatattcctaactgtgattgatttattaacag 42928495  T
Q  101 ctaaatcatatagccgtctaaaaca--cacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcct 198  Q
    | || |||||||| || |||||||   |||||  |||||||  ||| |||||||| || ||| ||||||| || || || || || || |||||||||||    
T  42928496 ccaagtcatataggcgactaaaacggtcacacctcggaacatcaccgcaccaacaatcacgctaaaaatctgtttcagcaccgtcacccaccctcctcct 42928595  T
Q  199 aacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    || |||  |  ||||||||||||| |||||||| |||||| |||||||    
T  42928596 aaaacacgccccaaaccagccctctccaccctcacctatcccatctct 42928643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10777029 - 10777072
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgcccccc 44  Q
    |||||||||||||||||||| |||||||| ||||||||||||||    
T  10777029 ctcctcccatacccataaaccacgacgccgctgccacgcccccc 10777072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 33169923 - 33170089
Alignment:
Q  2 tcctcccatacccataaacgacgacgccactgccacg-ccccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagag 100  Q
    |||||||| ||||| || || || ||||||||||||| |||||||||| ||||||  ||||||  |||||||||||| ||| | |  ||||| ||||  |    
T  33169923 tcctcccaaacccacaagcggcgtcgccactgccacgcccccccaccaacctccaaacccaactggaacatgttcctaaccgtgacaactttgttgactg 33170022  T
Q  101 ctaaatcatatagccgtctaaa--acacacacaacggaacactaccacaccaacagtctcgccaaaa 165  Q
      |||||| | |||||||||||   |||||| ||||||||| | ||||||||||| || ||||||||    
T  33170023 tcaaatcaaaaagccgtctaaatcgcacacaaaacggaacatttccacaccaacaatcacgccaaaa 33170089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 42514129 - 42514232
Alignment:
Q  143 ccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcat 242  Q
    ||||||||||| || ||||| ||||| ||||| || ||||| || || |||||||||||||||    ||||||| ||||| |||||||| |||||| |||    
T  42514129 ccacaccaacaatcacgccagaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccat 42514228  T
Q  243 ctct 246  Q
    ||||    
T  42514229 ctct 42514232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 28535423 - 28535303
Alignment:
Q  126 cacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctcccc 225  Q
    ||||||| ||||||   ||||||||||| || ||||||||||| || ||  | || || || ||||||||||||||||||    ||||||| ||||| ||    
T  28535423 cacacaaaggaacatctccacaccaacaatcccgccaaaaatctgtttctacaccgtctcccaccctcctcctaacacaagacccaaaccaaccctctcc 28535324  T
Q  226 accctcgcctatctcatctct 246  Q
    |||||| |||||| |||||||    
T  28535323 accctcacctatcccatctct 28535303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 35983522 - 35983419
Alignment:
Q  143 ccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcat 242  Q
    ||||||| ||| || ||||||||||| || || || || || || ||||||||||||||||||  | ||||||| ||||| ||||| || |||||| |||    
T  35983522 ccacacctacaatcacgccaaaaatccgtttctgcaccgtctcccaccctcctcctaacacaagatccaaaccaaccctctccaccgtcacctatcccat 35983423  T
Q  243 ctct 246  Q
    ||||    
T  35983422 ctct 35983419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 27116889 - 27116801
Alignment:
Q  158 cgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||||||||| |||||  | ||||| || ||||||||||||||||||    ||||||| ||| | |||||||| |||||| |||||||    
T  27116889 cgccaaaaatcagtatctacaccatctcccaccctcctcctaacacaagacccaaaccatccccctccaccctcacctatcccatctct 27116801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 2821910 - 2821662
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgc-cccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    ||||||||| |||||||| || |||||||||  |||||| |||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||      
T  2821910 ctcctcccacacccataagcggcgacgccaccaccacgctcccccaccatcctccacccccaacaagaacatgttccttaccgtgattgctttattgatg 2821811  T
Q  100 gctaaatcatatagccgtctaaaacac--acacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||| ||||| || || ||||| | |  ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||    
T  2821810 gctaagtcataaagacgcctaaagcgctcacacaacggaacactaccacaccaacaatctcgccaaaaatcggtatcagctccatcccccaccctcctcc 2821711  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||| |||||||||| ||||||||||||||||||||| |||||||    
T  2821710 taacacaatctgcaaaccaaccctccccaccctcgcctatcccatctct 2821662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 54483035 - 54482787
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgc-cccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    ||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||      
T  54483035 ctcctcccacacccataaccggcgacgccactgccacgctcccccaccatcctccacccccaacaagaacatgttcctcaccgtaattgatttattgatg 54482936  T
Q  100 gctaaatcatatagccgtctaaaacac--acacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||| ||||| ||  | ||||| | |  |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||    
T  54482935 gctaagtcataaagatgcctaaagcgctcacacaagggaacactaccacaccaacaatctcgccaaaaatcggtatcagctccatcccccaccctcctcc 54482836  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||| |  ||||||| | ||| ||||||||||||||| |||||||    
T  54482835 taacacaatccacaaaccaactctctccaccctcgcctatcccatctct 54482787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 48312359 - 48312606
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgcccccc-accatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    |||||| || ||| |||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||  ||||||||      
T  48312359 ctcctcacacaccaataaccggcgacgccactgccacgcccccccaccatcctccacccccaacaagaacatgttcctcaccgtgattgatttattgatg 48312458  T
Q  100 gctaaatcatatagccgtctaaaacac--acacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
    ||||| ||||| || || ||||| | |  ||||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||    
T  48312459 gctaagtcataaagtcgcctaaagcgctcacacaacggaaca-taccacaccaacaatctcgccaaaaatcgatatcagctccatcccccaccctcctcc 48312557  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||| |  ||||||| ||||| |||||||||||||||||||||||    
T  48312558 taacacaatccacaaaccaaccctctccaccctcgcctatctcatctct 48312606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 55725555 - 55725333
Alignment:
Q  28 ccactgccacgcccc-ccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcatatagccgtctaaaacac 126  Q
    |||||||||||| || ||||| ||||||||||||||||||||||||||||| ||  | ||||||||||||| |||||| |||||||| || ||||| | |    
T  55725555 ccactgccacgctccgccaccctcctccacccccaacaagaacatgttccttactgtgattactttattgacagctaagtcatatagtcgcctaaagcgc 55725456  T
Q  127 --acacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccc 224  Q
      |||||| |||||||||||||||||||| |||||||||||||| ||   ||||||||| || |||||| ||||||||||| | |||||||| |||||||    
T  55725455 ttacacaaaggaacactaccacaccaacaatctcgccaaaaatctgttgtggctccatctcccaccctcatcctaacacaatccgcaaaccaaccctccc 55725356  T
Q  225 caccctcgcctatctcatctctg 247  Q
    |||||||||||||| ||||||||    
T  55725355 caccctcgcctatcccatctctg 55725333  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 5789952 - 5789720
Alignment:
Q  17 aaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcaccataattactttattgagagctaaatcatatagcc 115  Q
    |||||| ||||||||||||| ||| |||||||| ||||||| || ||   ||| |||||| ||||| | |||   || |||| ||| || |||||||| |    
T  5789952 aaacgatgacgccactgccatgcctccccaccaacctccacacctaagtcgaatatgttcatcaccgtgattggcttgttgacagccaagtcatataggc 5789853  T
Q  116 gtctaaaac--acacacaacggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaa 213  Q
    |||||||||  ||||||||||||||| | ||||||||||| || |||||||||||  ||| |||||||||||  |||||||| ||||||||    |||||    
T  5789852 gtctaaaacgcacacacaacggaacatttccacaccaacaatcacgccaaaaatcaatattggctccatcccgcaccctcctactaacacacgacgcaaa 5789753  T
Q  214 ccagccctccccaccctcgcctatctcatctct 246  Q
    ||| ||||||||||||||||||||| |||||||    
T  5789752 ccatccctccccaccctcgcctatcccatctct 5789720  T

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Target: chr4; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 11587074 - 11586826
Alignment:
Q  1 ctcctcccatacccataaacgacgacgccactgccacgcccccc-accatcctccacccccaacaagaacatgttcctcaccataattactttattgaga 99  Q
    |||||| || |||||||||||||| ||||||||||||||| ||| |||| | |||||||||||||| |||||  || | |||   ||| ||||||||| |    
T  11587074 ctcctctcacacccataaacgacggcgccactgccacgcctccctaccaacatccacccccaacaataacatagtcataaccgcgattgctttattgaca 11586975  T
Q  100 gctaaatcatatagccgtctaaaacacacacaac--ggaacactaccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcc 197  Q
     |||  ||||||| ||||||||| | | |||||   || |||  ||||||||||||||| ||||| ||||| || |||| |||||||   ||||||||||    
T  11586974 actatgtcatataaccgtctaaagcgctcacaaaatgggacatcaccacaccaacagtcacgccagaaatcagtttcggatccatccttcaccctcctcc 11586875  T
Q  198 taacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||| | |  ||||||||| |||||||||| |||||| |||||||    
T  11586874 taacacaatccgagaaccagcccaccccaccctcacctatcccatctct 11586826  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 48242642 - 48242722
Alignment:
Q  2 tcctcccatacccataaacgacgacgccactgccacgcc-ccccaccatcctccacccccaacaagaacatgttcctcacc 81  Q
    |||||||| ||||| |||||| | ||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||    
T  48242642 tcctcccaaacccacaaacgatgtcgccactgccacgcctccccgccaacctccacacccaacaagaacatgttcctcacc 48242722  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 23642322 - 23642219
Alignment:
Q  143 ccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcat 242  Q
    ||||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||||    ||||||| ||||| |||||||| |||||| |||    
T  23642322 ccacaccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccat 23642223  T
Q  243 ctct 246  Q
    ||||    
T  23642222 ctct 23642219  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 47419213 - 47419316
Alignment:
Q  143 ccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcat 242  Q
    ||||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||||    ||||||| ||||| |||||||| |||||| |||    
T  47419213 ccacaccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccat 47419312  T
Q  243 ctct 246  Q
    ||||    
T  47419313 ctct 47419316  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 246
Target Start/End: Original strand, 19755691 - 19755779
Alignment:
Q  158 cgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||||||||| || || ||||| || |||||||||||||||||     ||||||| ||||| |||||||| |||||| |||||||    
T  19755691 cgccaaaaatcggtgtctgcaccatctcccaccctcctcctaacacacatcccaaaccatccctctccaccctcacctatcccatctct 19755779  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 19784115 - 19784027
Alignment:
Q  158 cgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||||||||| || || ||||| || |||||||||||||||||     ||||||| ||||| |||||||| |||||| |||||||    
T  19784115 cgccaaaaatcggtgtctgcaccatctcccaccctcctcctaacacacatcccaaaccatccctctccaccctcacctatcccatctct 19784027  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 15740645 - 15740730
Alignment:
Q  158 cgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcatct 244  Q
    ||||||||||| ||||| || ||||| || |||||||||||| |||||    ||||||| ||||| |||||||| ||||||||||||    
T  15740645 cgccaaaaatcagtatctgcaccatctcccaccctcctccta-cacaagacccaaaccatccctctccaccctcacctatctcatct 15740730  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 1828256 - 1828168
Alignment:
Q  158 cgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    |||||||| || || || || ||||| || ||||||||||||||||||    ||||||| ||||| |||||||| |||||| |||||||    
T  1828256 cgccaaaagtcagtgtctgcaccatctcccaccctcctcctaacacaagacccaaaccatccctcaccaccctcacctatcccatctct 1828168  T

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Target: scaffold0034 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 105574 - 105471
Alignment:
Q  143 ccacaccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcat 242  Q
    ||||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||||    ||||||| ||||| |||||||| |||||| |||    
T  105574 ccacaccaacaatcacgccaaaaatcagtatctgccccatctcccactctcctcctaacacaagacccaaaccatccctctccaccctcacctatcccat 105475  T
Q  243 ctct 246  Q
    ||||    
T  105474 ctct 105471  T

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Target: scaffold0472 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 3664 - 3764
Alignment:
Q  146 caccaacagtctcgccaaaaatcggtatcggctccatcccctaccctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcatctc 245  Q
    |||||||| || ||||||||||||||||| || ||||| || |||||||||||||| ||     ||||||| ||||| |||||||| |||||| ||||||    
T  3664 caccaacaatcacgccaaaaatcggtatccgcaccatctcccaccctcctcctaacgcaggacccaaaccacccctctccaccctcacctatcccatctc 3763  T
Q  246 t 246  Q
    |    
T  3764 t 3764  T

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Target: scaffold1350 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 1 - 56
Alignment:
Q  191 ctcctcctaacacaacctgcaaaccagccctccccaccctcgcctatctcatctct 246  Q
    ||||||||||||||| | |||||||| |||||| |||||||||||||| |||||||    
T  1 ctcctcctaacacaatccgcaaaccaaccctccacaccctcgcctatcccatctct 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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