View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0938_high_3 (Length: 391)
Name: NF0938_high_3
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0938_high_3 |
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| [»] scaffold0649 (3 HSPs) |
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Alignment Details
Target: scaffold0649 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 235 - 379
Target Start/End: Complemental strand, 6027 - 5883
Alignment:
| Q |
235 |
ataatgtacttttcatgcttcgannnnnnnaatacgtttgtagaccaacccggtaacgaatttccaaaagggagtgaataatgtaccttgaacaatttca |
334 |
Q |
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| T |
6027 |
ataatgtacttttcatgcttcggtttttttaatacgtttgtagaccaacccggtaacgaatttccaaaagggagggaataatgtaccttgaacaatttca |
5928 |
T |
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| Q |
335 |
tcttcatagttataataaatataagaaaaacaaaagtttattcat |
379 |
Q |
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| T |
5927 |
tcttcatagttataataaatataagaaaaacaaaagtttattcat |
5883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 6199 - 6074
Alignment:
| Q |
110 |
aaatacagtcctatacatgtaccaagagttgtgtttacatagattctatgacaatatcagaagaacaacaatatccaagaattggtgtagaaataaagta |
209 |
Q |
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| T |
6199 |
aaatacagtc-tatacatgtaccaagagttgtgtttacatagattctatggcaatatcagaagaacaacaatatccaagaattggtgtagaaataaagta |
6101 |
T |
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| Q |
210 |
attctcacttcatgaatcattatggat |
236 |
Q |
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| T |
6100 |
attctcacttcatgaatcattatggat |
6074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 6300 - 6219
Alignment:
| Q |
31 |
gttgtagacctacaacgcacaaaaatagaacagaaacacgagnnnnnnnntaaatgcataattcaatatcggaagaaagaaata |
114 |
Q |
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| T |
6300 |
gttgtagacctacaacgcacaaaaatagaacagaaacacgag--aaaaaataaatgcataattcaatatcggaagaaagaaata |
6219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 20968400 - 20968346
Alignment:
| Q |
182 |
atccaagaattggtgtagaaataaagtaattctcacttcatgaatcattatggat |
236 |
Q |
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| T |
20968400 |
atccaagaactggtgtagaaataaagtaattctcacttcatgaatcatcatggat |
20968346 |
T |
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