View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0938_high_5 (Length: 347)
Name: NF0938_high_5
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0938_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 111 - 334
Target Start/End: Original strand, 43712087 - 43712308
Alignment:
| Q |
111 |
accctttgctcaattctatttaatgttgtattatttcttttctttt-ataggaataatacttgatgttacgtatcggagggagaggattattttgcatac |
209 |
Q |
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| T |
43712087 |
accctttgctcaattctatttaatgttgtattatttcttttctttttataagaataatacttgatgttacgtataggagg-agaggattattttgcatac |
43712185 |
T |
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| Q |
210 |
atacatacatacgtgatttgcatatttatcaaaagtacataatataatcatattcatgaaatacaatgtgtggacccatatacatacttatataagctca |
309 |
Q |
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| T |
43712186 |
atacatacatacgtgatttgcatatttatcaaaagtacataatataatcatattcatgaaatacaatgt-cagacccatatacatatttatataagctca |
43712284 |
T |
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| Q |
310 |
ccccccgcttcattattatgtgcct |
334 |
Q |
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| T |
43712285 |
-cccccgcttcattattatgtgcct |
43712308 |
T |
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