View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0938_low_1 (Length: 639)

Name: NF0938_low_1
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0938_low_1
NF0938_low_1
[»] chr2 (3 HSPs)
chr2 (300-639)||(35228045-35228384)
chr2 (30-142)||(35227849-35227961)
chr2 (177-260)||(35227963-35228046)
[»] chr4 (1 HSPs)
chr4 (383-431)||(31176467-31176515)


Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 300 - 639
Target Start/End: Original strand, 35228045 - 35228384
Alignment:
Q  300 cttaaacaattggataagtgggaaccatagcaattccacatgaaccttccttggcatgcacgtctctcttaatcttgatatatcctttctcaccccattt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35228045 cttaaacaattggataagtgggaaccatagcaattccacatgaaccttccttggcatgcacgtctctcttaatcttgatatatcctttctcaccccattt 35228144  T
Q  400 agtaccccatgaatttttcactagccaatacttcacaccatcatcactggtgccataaccaactatagtcactgtatgatctaaataaattccacatttt 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||    
T  35228145 agtaccccatgaatttttcactagccaatacttcacaccatcatcactggtaccataaccaactatagtaactgtatgatctaaatcaattccacatttt 35228244  T
Q  500 cctttcaaaattccacttgagtaaaattgaaaagcgcgttttgtcgcggcaatataaaccgctataggttgatttgccaccgcttttaagagcgcctttt 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35228245 cctttcaaaattccacttgagtaaaattgaaaagcgcgttttgtcgcggcgatataaaccgctataggttgatttgccaccgcttttaagagcgcctttt 35228344  T
Q  600 cattattggcggaaacatgctcatatcccttaattttagc 639  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  35228345 cattattggcgggaacatgctcatatcccttaattttagc 35228384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 35227849 - 35227961
Alignment:
Q  30 agctatatagtaatgggttattgagtgataccaatggtaacttagttctcattttgaagggaaacaaactcactcaattcatataattcatgagaaaaat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||    
T  35227849 agctatatagtaatgggttattgagtgataccaatggtaacttagttctcattttgaagtgaaacaaactcactcatttcatatcattcatgagaaaaat 35227948  T
Q  130 ctcaagtattaca 142  Q
    |||||||||||||    
T  35227949 ctcaagtattaca 35227961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 35227963 - 35228046
Alignment:
Q  177 tacacaccctagctatttattcaaacactcacacacataactaattcaaacacaagcaattcatcaaactagtataagaagact 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35227963 tacacaccctagctatttattcaaacactcacacacataactaattcaaacacaagcaattcatcaaactagtataagaagact 35228046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 31176467 - 31176515
Alignment:
Q  383 cctttctcaccccatttagtaccccatgaatttttcactagccaatact 431  Q
    ||||||||||||||   |||||||||||||||||| |||| ||||||||    
T  31176467 cctttctcaccccacccagtaccccatgaattttttactaaccaatact 31176515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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