View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0938_low_11 (Length: 316)
Name: NF0938_low_11
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0938_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 14 - 283
Target Start/End: Complemental strand, 16542845 - 16542576
Alignment:
| Q |
14 |
gaaaaaagatacggtggtttggtggagagacgtagtagaagttggagtcacagagtcataagtttcaaatattattcattaacaaagcagtaacaactca |
113 |
Q |
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| T |
16542845 |
gaaaaaagatacggtggtttggtggagagacgtagtagaagttggagtcacagagtcataagtttcaaatattattcattaacaaagcagtaacaactca |
16542746 |
T |
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| Q |
114 |
ctaacattaaaaatcaatttattgaagnnnnnnnnnnnnnnnnnnntatataacattggaaacataggttgtagttgcacatgtcgtatggaagaatttt |
213 |
Q |
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| T |
16542745 |
ctaacattaaaaatcaatttattgaagaaaaaactaaaattaaaaatatataacattggaaacataggttgtagttgcacatgtcgtatggaagaatttt |
16542646 |
T |
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| Q |
214 |
aatataatttgatttagtgtaaaacaaagcagtaagataacatggtgttccgctggcttaaacatgtaca |
283 |
Q |
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| T |
16542645 |
aatataatttgatttagtgtaaaacaaagcagtaagataacatggtgttccgcttgtttgaacatgtaca |
16542576 |
T |
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