View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0938_low_12 (Length: 309)
Name: NF0938_low_12
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0938_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 97 - 282
Target Start/End: Complemental strand, 45168964 - 45168775
Alignment:
| Q |
97 |
aaaaacaccgatcgggtcgtatcctccaataggttttgtgcgaccaagagttatggcccagtaaatatgagggcccgtagagctatcccataagtttgac |
196 |
Q |
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| T |
45168964 |
aaaaacaccgatcgggtcgtatcctccaatagattttgtgcgaccaagagttatggcccgataaatatgagggcccgtagagctatcccataagtctgac |
45168865 |
T |
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| Q |
197 |
tctctttgaatagagatagtgtgaagcatttgttga----taatcactctttccttttgttttcctcatgaatcccaccattttcctatg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45168864 |
tctctttgaatagagatagtgtgaagcatttgttgataattaatcactctttccttttgttttcctcatgaatcccaccattttcctatg |
45168775 |
T |
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