View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0938_low_13 (Length: 308)
Name: NF0938_low_13
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0938_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 51841113 - 51841296
Alignment:
| Q |
54 |
aatatcacaaagaggagcatttgaagcgtactaagaggagtctctaaaacaagcaaattcaaattatccttagtaatgttaatgtttgcaagttaatcat |
153 |
Q |
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| T |
51841113 |
aatatcacaaagaggagtatttgaagcgtactaagaggagtctctaaaacaagcaaattcaaattatccttagtaatgctaatgtttgcaagctaatcat |
51841212 |
T |
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| Q |
154 |
cactttgatttccttcgtgtctagtatgattgatttgcacatgtcacctcatcttcagaacctttcggatacgcttaactaaaat |
238 |
Q |
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| T |
51841213 |
cactttga-ttccttcgtgtctagtatgattgatttgcacatgtcacctcatcttcagaacctttcggatacgctcaactaaaat |
51841296 |
T |
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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 32786150 - 32786043
Alignment:
| Q |
89 |
aggagtctctaaaacaagcaaattcaaattatccttagtaatgttaatgtttgcaagttaatcatcactttgatttccttcgtgtctagtatgattgatt |
188 |
Q |
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| T |
32786150 |
aggagtctctaaaacaagcaagttcaaatgatccttaacaatgttaatgtttgcaaaccaatcaacacttttatttccttcacaacaagtatgattgatt |
32786051 |
T |
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| Q |
189 |
tgcacatg |
196 |
Q |
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| T |
32786050 |
tgcacatg |
32786043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 213
Target Start/End: Original strand, 26381190 - 26381342
Alignment:
| Q |
61 |
caaagaggagcatttgaagcgtactaagaggagtctctaaaacaagcaaattcaaattatccttagtaatgttaatgtttgcaagttaatcatcactttg |
160 |
Q |
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| T |
26381190 |
caaataggagcttttgaagttcactaggaggagtctccaaaacaaacaaattcaaatgatccttagtaatgctgatgttagcaagccaatcaaaactttt |
26381289 |
T |
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| Q |
161 |
atttccttcgtgtctagtatgattgatttgcacatgtcacctcatcttcagaa |
213 |
Q |
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| T |
26381290 |
atttccttcacacgaagtatggttgatttgcacatgccatctcatcttcagaa |
26381342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 9031532 - 9031667
Alignment:
| Q |
73 |
tttgaagcgtactaagaggagtctctaaaacaagcaaattcaaattatccttagtaatgttaatgtttgcaagttaatcatcactttgatttccttcgtg |
172 |
Q |
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| T |
9031532 |
tttgaagctcactaggaagagtctccaaaaaaagcaaattcaaatgatccttaataatgctaatgtttgcaagccaatcaacacttctatttccttcacg |
9031631 |
T |
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| Q |
173 |
tctagtatgattgatttgcacatgtcacctcatctt |
208 |
Q |
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| T |
9031632 |
ttaagtatggttaattttcacatgttatctcatctt |
9031667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 23410135 - 23410058
Alignment:
| Q |
134 |
aatgtttgcaagttaatcatcactttgatttccttcgtgtctagtatgattgatttgcacatgtcacctcatcttcagaa |
213 |
Q |
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||||||||||||| ||||| |||||| ||||| |||| | |||||| |||||||| ||||||||||||||||||||| |
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| T |
23410135 |
aatgtttgcaagtcaatcaacacttttatttctttcgcgcaaagtatggttgatttg--catgtcacctcatcttcagaa |
23410058 |
T |
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