View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0938_low_15 (Length: 293)
Name: NF0938_low_15
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0938_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 17734663 - 17734414
Alignment:
| Q |
19 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
17734663 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag |
17734564 |
T |
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| Q |
119 |
ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgt |
218 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
17734563 |
ccggcagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataacaagtgtttggtgatgt |
17734464 |
T |
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| Q |
219 |
tcagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
268 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17734463 |
tcagagaaacgttggtgaggtttgtcagtgattttccgatgagattctgc |
17734414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 17743903 - 17743656
Alignment:
| Q |
19 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag |
118 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
17743903 |
gagcacagaagaaacaacctgagagcataacgatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag |
17743804 |
T |
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| Q |
119 |
ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgt |
218 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
17743803 |
ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaatgttcttttcattgagtttttgattggataacaagtgtttggtgatgt |
17743704 |
T |
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| Q |
219 |
tcagagaaacgttggtgaggttggtcagtgattttccgatgagattct |
266 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
17743703 |
tcagagaaacgttggtgaatttggtgagtgattttccgatgagattct |
17743656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 16720679 - 16720430
Alignment:
| Q |
19 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | ||||||||||||| |
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| T |
16720679 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggag |
16720580 |
T |
|
| Q |
119 |
ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgt |
218 |
Q |
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||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||| |
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| T |
16720579 |
ccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt |
16720480 |
T |
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| Q |
219 |
tcagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
268 |
Q |
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||| |||| |||||| ||||| || | |||||||||||||||||||||| |
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| T |
16720479 |
tcatggaaatgttggttaggtttgtaaatgattttccgatgagattctgc |
16720430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 17697693 - 17697444
Alignment:
| Q |
19 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | ||||||||||||| |
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| T |
17697693 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggag |
17697594 |
T |
|
| Q |
119 |
ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgt |
218 |
Q |
| |
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||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||| |
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| T |
17697593 |
ccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt |
17697494 |
T |
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| Q |
219 |
tcagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
268 |
Q |
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||| |||| |||||| ||||| || | |||||||||||||||||||||| |
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| T |
17697493 |
tcatggaaatgttggttaggtttgtaaatgattttccgatgagattctgc |
17697444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 17716612 - 17716363
Alignment:
| Q |
19 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag |
118 |
Q |
| |
|
||||||||||||||| ||| ||||| ||||||||||||||| |||| |||||| |||||||||||| |||||||||| ||||| | ||||||||||||| |
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| T |
17716612 |
gagcacagaagaaaccagccgagagtataaggatttgagattaccgggggattctgactggaggaaggagagaagttgtttttgagtgggaccctcggag |
17716513 |
T |
|
| Q |
119 |
ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgt |
218 |
Q |
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||||||| ||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| || ||||||||||||||||||||||| |
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| T |
17716512 |
ccggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgt |
17716413 |
T |
|
| Q |
219 |
tcagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
268 |
Q |
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|
||| ||||||||||| ||||| || |||||||||| ||||||||||||| |
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| T |
17716412 |
tcatggaaacgttggttaggtttgtgagtgattttctgatgagattctgc |
17716363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 16729552 - 16729303
Alignment:
| Q |
19 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag |
118 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| | |||||||| |||| |
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| T |
16729552 |
gagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggag |
16729453 |
T |
|
| Q |
119 |
ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgt |
218 |
Q |
| |
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| ||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||||||||| |
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| T |
16729452 |
ctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt |
16729353 |
T |
|
| Q |
219 |
tcagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
268 |
Q |
| |
|
||| ||||||||||| ||||| || |||||||||| ||||||||||||| |
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| T |
16729352 |
tcatggaaacgttggttaggtttgtgagtgattttctgatgagattctgc |
16729303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 17706624 - 17706375
Alignment:
| Q |
19 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag |
118 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| | |||||||| |||| |
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| T |
17706624 |
gagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggag |
17706525 |
T |
|
| Q |
119 |
ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgt |
218 |
Q |
| |
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| ||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||||||||| |
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| T |
17706524 |
ctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt |
17706425 |
T |
|
| Q |
219 |
tcagagaaacgttggtgaggttggtcagtgattttccgatgagattctgc |
268 |
Q |
| |
|
||| ||||||||||| ||||| || |||||||||| ||||||||||||| |
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|
| T |
17706424 |
tcatggaaacgttggttaggtttgtgagtgattttctgatgagattctgc |
17706375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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