View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0938_low_19 (Length: 260)

Name: NF0938_low_19
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0938_low_19
NF0938_low_19
[»] chr7 (10 HSPs)
chr7 (30-260)||(17733985-17734223)
chr7 (102-172)||(46790697-46790767)
chr7 (30-90)||(31592443-31592503)
chr7 (129-172)||(47868497-47868540)
chr7 (128-172)||(41964819-41964863)
chr7 (125-172)||(31594337-31594384)
chr7 (125-172)||(43349578-43349625)
chr7 (125-172)||(43352126-43352173)
chr7 (107-172)||(2206283-2206348)
chr7 (105-165)||(45173910-45173970)
[»] chr1 (10 HSPs)
chr1 (30-90)||(18239571-18239631)
chr1 (125-172)||(50915367-50915414)
chr1 (125-171)||(18239454-18239500)
chr1 (106-172)||(45471406-45471472)
chr1 (125-172)||(38047466-38047513)
chr1 (106-172)||(21761279-21761345)
chr1 (128-172)||(15291152-15291196)
chr1 (128-172)||(15356394-15356438)
chr1 (124-172)||(37770808-37770856)
chr1 (129-173)||(46201226-46201270)
[»] chr3 (21 HSPs)
chr3 (106-172)||(2286038-2286104)
chr3 (110-172)||(12486054-12486116)
chr3 (107-172)||(51014288-51014353)
chr3 (109-172)||(12515315-12515378)
chr3 (125-172)||(55151358-55151405)
chr3 (107-172)||(13944-14009)
chr3 (128-172)||(21196603-21196647)
chr3 (128-172)||(37459730-37459774)
chr3 (128-172)||(52561610-52561654)
chr3 (125-172)||(30715876-30715923)
chr3 (125-172)||(38108774-38108821)
chr3 (125-171)||(18878733-18878779)
chr3 (107-172)||(52560284-52560349)
chr3 (41-89)||(18878859-18878907)
chr3 (128-172)||(21196419-21196463)
chr3 (128-172)||(30191667-30191711)
chr3 (128-172)||(40465595-40465639)
chr3 (128-172)||(42329097-42329141)
chr3 (128-172)||(45266536-45266580)
chr3 (128-172)||(46412472-46412516)
chr3 (128-172)||(48098159-48098203)
[»] scaffold0251 (1 HSPs)
scaffold0251 (30-90)||(1971-2031)
[»] chr2 (8 HSPs)
chr2 (109-172)||(31435044-31435107)
chr2 (128-170)||(4175274-4175316)
chr2 (128-172)||(31298851-31298895)
chr2 (106-172)||(22712199-22712265)
chr2 (106-171)||(44070750-44070815)
chr2 (128-172)||(10602229-10602273)
chr2 (108-172)||(24108451-24108515)
chr2 (128-172)||(31297642-31297686)
[»] scaffold0688 (1 HSPs)
scaffold0688 (106-172)||(5927-5993)
[»] chr8 (6 HSPs)
chr8 (106-172)||(44319866-44319932)
chr8 (125-172)||(20495563-20495610)
chr8 (129-172)||(26701831-26701874)
chr8 (128-172)||(8036252-8036296)
chr8 (128-172)||(40678292-40678336)
chr8 (128-172)||(45120758-45120802)
[»] chr5 (9 HSPs)
chr5 (128-172)||(19877099-19877143)
chr5 (128-172)||(23067695-23067739)
chr5 (106-172)||(36759208-36759274)
chr5 (125-172)||(19870454-19870501)
chr5 (129-172)||(26747696-26747739)
chr5 (128-172)||(8214319-8214363)
chr5 (128-172)||(16931284-16931328)
chr5 (128-172)||(22965776-22965820)
chr5 (124-172)||(24170019-24170067)
[»] chr4 (10 HSPs)
chr4 (128-172)||(39388412-39388456)
chr4 (125-172)||(22436039-22436086)
chr4 (106-172)||(35430499-35430565)
chr4 (125-172)||(22438608-22438655)
chr4 (129-172)||(51025991-51026034)
chr4 (128-172)||(17931083-17931127)
chr4 (128-172)||(21168419-21168463)
chr4 (128-172)||(45936608-45936652)
chr4 (128-172)||(49790619-49790663)
chr4 (128-172)||(51029611-51029655)
[»] chr6 (8 HSPs)
chr6 (129-172)||(22868437-22868480)
chr6 (106-172)||(33523910-33523976)
chr6 (107-172)||(29268395-29268460)
chr6 (125-172)||(5613797-5613844)
chr6 (117-172)||(29266837-29266892)
chr6 (102-138)||(9094257-9094293)
chr6 (107-139)||(29230602-29230634)
chr6 (109-161)||(29232135-29232187)
[»] scaffold0325 (1 HSPs)
scaffold0325 (106-172)||(2815-2881)
[»] scaffold0004 (1 HSPs)
scaffold0004 (128-172)||(130566-130610)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 17733985 - 17734223
Alignment:
Q  30 gtttctggttatgcagtttctgtgttcttaagatgcagttctcaatggcagttaactgccggcgtatcattgaac-------aaccgctgggggcataaa 122  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||| |||| |||||| |       ||| |||||| |||||||    
T  17733985 gtttctggttatgtagtttctgcgttcttaagatgtagttctcaacggcagttaactgccgacgtagcattgagcggttgttaacagctgggagcataaa 17734084  T
Q  123 catattttacttgtgtcaattggaacttttctatgtcaaaaaagcaatttcaaagtataaatgtaggggtgtgggatatga-ttcccttacaattttaca 221  Q
    | |||||||||||||||||||| ||||||||||| | ||||||  | ||| |||||||||||||||||||||||||||| | |||||||| |||||||||    
T  17734085 cgtattttacttgtgtcaattgaaacttttctatataaaaaaacaatttttaaagtataaatgtaggggtgtgggatataacttcccttataattttaca 17734184  T
Q  222 cgaagcgaattgggccaaaaataattatgagatcgggcc 260  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17734185 cgaagcgaattgggccaaaaataattatgagatcgggcc 17734223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 46790767 - 46790697
Alignment:
Q  102 aacaaccgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||| |||||||  |||||||||||||||  |  ||||||||||||||||||||||||||||    
T  46790767 aacaaccgctgggagcataaaggtattttacttgtgtctttatgaacttttctatgtcaaaaaagcaattt 46790697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 31592503 - 31592443
Alignment:
Q  30 gtttctggttatgcagtttctgtgttcttaagatgcagttctcaatggcagttaactgccg 90  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||| |||||    
T  31592503 gtttatggttatgcagtttctgcgtttttaagatgcagttctcaacggcagttaattgccg 31592443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 47868497 - 47868540
Alignment:
Q  129 ttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||| ||||||| |||||||||||||||||||||||||||||    
T  47868497 ttacttatgtcaataggaacttttctatgtcaaaaaagcaattt 47868540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 41964819 - 41964863
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||| |||||||||||||||||| |||||| |||||||||||    
T  41964819 tttacttatgtcaattggaacttttcaatgtcagaaaagcaattt 41964863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 31594337 - 31594384
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||||||||||||||||| || ||| |||| ||||||    
T  31594337 tattttacttgtgtcaattggaacttttcaatatcagaaaaacaattt 31594384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 43349625 - 43349578
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||| | |||||| || |||||||||||||||||    
T  43349625 tattttacttgtgtcaatagaaactttcctttgtcaaaaaagcaattt 43349578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 43352126 - 43352173
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||||| |||||||| |||||| |||| ||||||    
T  43352126 tattttacttgtgtcaattgaaacttttcaatgtcagaaaaacaattt 43352173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 2206283 - 2206348
Alignment:
Q  107 ccgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||| ||| | ||||||  ||||||||||||||| |||| | |||||||||| |||||||||||    
T  2206283 ccgctgagggtaaaaacatcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 2206348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 45173910 - 45173970
Alignment:
Q  105 aaccgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaa 165  Q
    ||||||||| ||||||||| |||||||||| ||||  |  |||||||||||| ||||||||    
T  45173910 aaccgctggaggcataaacgtattttacttatgtctttatgaacttttctatatcaaaaaa 45173970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 18239631 - 18239571
Alignment:
Q  30 gtttctggttatgcagtttctgtgttcttaagatgcagttctcaatggcagttaactgccg 90  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| | |||||||||||||    
T  18239631 gtttctggttatgcagtttctgcgttcttaagatgcggttctcaacgacagttaactgccg 18239571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 50915367 - 50915414
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||    
T  50915367 tattttacttgtgtcaattggaacttttcaatgtcagaaaagcaattt 50915414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 18239500 - 18239454
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaatt 171  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||    
T  18239500 tattttacttgtgtcaataggaagttttctatgtcaaaaaagcaatt 18239454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 45471472 - 45471406
Alignment:
Q  106 accgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||| |||||||||| ||||  |  ||| ||||||||||||||||||||||||    
T  45471472 accgctgggggcataaacgtattttacttatgtctttatgaagttttctatgtcaaaaaagcaattt 45471406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 38047466 - 38047513
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||||| |||||||| |||||| |||||||||||    
T  38047466 tattttacttgtgtcaattgaaacttttcaatgtcagaaaagcaattt 38047513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 21761345 - 21761279
Alignment:
Q  106 accgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||| |||||||  | ||||||||||| |||||||  ||| |||| |||||||||||||||||||    
T  21761345 accgctaggggcatttagatattttacttttgtcaatgtgaagttttttatgtcaaaaaagcaattt 21761279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 15291196 - 15291152
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||| |||||||||||| ||| |||||||| |||||    
T  15291196 tttacttgtgtcacttggaacttttcaatgccaaaaaagaaattt 15291152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 15356394 - 15356438
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||    
T  15356394 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 15356438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 37770808 - 37770856
Alignment:
Q  124 atattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||||  |||||| || |||||| |||||||||||    
T  37770808 atattttacttgtgtcaatgtgaacttatcaatgtcagaaaagcaattt 37770856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 46201226 - 46201270
Alignment:
Q  129 ttacttgtgtcaattggaacttttctatgtcaaaaaagcaatttc 173  Q
    |||||||||||||| |||| | ||| |||||||||||||||||||    
T  46201226 ttacttgtgtcaataggaaatattccatgtcaaaaaagcaatttc 46201270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 2286038 - 2286104
Alignment:
Q  106 accgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||| |||||||||||||||||||||| ||||||  |  ||||||||||||||||||||||||||||    
T  2286038 accgttgggggcataaacatattttacctgtgtctttatgaacttttctatgtcaaaaaagcaattt 2286104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 12486116 - 12486054
Alignment:
Q  110 ctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||||||||||||||||||  |  |||||||||||||| |||||||||||||    
T  12486116 ctgggggcataaacatattttacttgtgtctttatgaacttttctatgtaaaaaaagcaattt 12486054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 51014288 - 51014353
Alignment:
Q  107 ccgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||  |  ||||||||||||||||||||||||||||| |||||| |||||||||||    
T  51014288 ccgctgggggcatttaggtattttacttgtgtcaattggaacttttcaatgtcagaaaagcaattt 51014353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 12515315 - 12515378
Alignment:
Q  109 gctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||| ||||||| |||||||||||||||  |  ||| ||||||||||||||||||||||||    
T  12515315 gctggggacataaacgtattttacttgtgtctttatgaagttttctatgtcaaaaaagcaattt 12515378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 55151358 - 55151405
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||| |||||||||||||||||||| |||||| |||||||||||    
T  55151358 tattttacctgtgtcaattggaacttttcaatgtcagaaaagcaattt 55151405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 13944 - 14009
Alignment:
Q  107 ccgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||| ||||| |||||||||||||||||||||| ||||  ||||  ||| |||||||||||||    
T  13944 ccgctggaggcattaacatattttacttgtgtcaataggaaagtttcattgttaaaaaagcaattt 14009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 21196603 - 21196647
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | ||||||||||||||||||||||    
T  21196603 tttacttgtgtcaataggaagtattctatgtcaaaaaagcaattt 21196647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 37459774 - 37459730
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||    
T  37459774 tttacttgtgtcaatgtgaagttttctatgtcaaaaaagcaattt 37459730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 52561610 - 52561654
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||||||||||| |||| | |||||||||||    
T  52561610 tttacttgtgtcaattggaacttttcaatgttagaaaagcaattt 52561654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 30715923 - 30715876
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||| ||||||||  | |||||||||||||||||    
T  30715923 tattttacttgtgtcaataggaactttcatttgtcaaaaaagcaattt 30715876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 38108821 - 38108774
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||| |||||||||   |||||||||||||||||    
T  38108821 tattttacttgtgtcaataggaactttttattgtcaaaaaagcaattt 38108774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 18878779 - 18878733
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaatt 171  Q
    ||||||||||| |||||| |||| |||||||| ||||||||||||||    
T  18878779 tattttacttgcgtcaataggaagttttctatatcaaaaaagcaatt 18878733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 52560349 - 52560284
Alignment:
Q  107 ccgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||| |||||  || |||||||||||||||||| ||||  ||||  |||||||||||||||||    
T  52560349 ccgctggaggcatttacgtattttacttgtgtcaataggaaggtttcattgtcaaaaaagcaattt 52560284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 18878907 - 18878859
Alignment:
Q  41 tgcagtttctgtgttcttaagatgcagttctcaatggcagttaactgcc 89  Q
    |||||||| || |||||| |||||| |||||||| ||||||||||||||    
T  18878907 tgcagtttatgcgttctttagatgcggttctcaacggcagttaactgcc 18878859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 21196463 - 21196419
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||    
T  21196463 tttacttgtgtcaataggaaatattctatgtcagaaaagcaattt 21196419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 30191711 - 30191667
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||    
T  30191711 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 30191667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 40465639 - 40465595
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| |||||||||||| |||| ||||||    
T  40465639 tttacttgtgtcaataggaagttttctatgtcagaaaaacaattt 40465595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 42329097 - 42329141
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| ||| |||||||| |||||||||||    
T  42329097 tttacttgtgtcaataggaagtttcctatgtcagaaaagcaattt 42329141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 45266536 - 45266580
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | ||| ||||||||||||||||||    
T  45266536 tttacttgtgtcaataggaaatattcaatgtcaaaaaagcaattt 45266580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 46412516 - 46412472
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||    
T  46412516 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 46412472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 48098159 - 48098203
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||    
T  48098159 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 48098203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 1971 - 2031
Alignment:
Q  30 gtttctggttatgcagtttctgtgttcttaagatgcagttctcaatggcagttaactgccg 90  Q
    |||||| ||||||||||||||| |||||||||||||||||||||| | || ||||||||||    
T  1971 gtttctagttatgcagtttctgcgttcttaagatgcagttctcaacgacacttaactgccg 2031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 31435044 - 31435107
Alignment:
Q  109 gctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||||||||||||||  |  ||| ||||||||||||||||||||||||    
T  31435044 gctgggggcataaacgtattttacttgtgtctttatgaaattttctatgtcaaaaaagcaattt 31435107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 4175274 - 4175316
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaat 170  Q
    |||||||||||||||||||||||||| |||||| |||||||||    
T  4175274 tttacttgtgtcaattggaacttttcaatgtcagaaaagcaat 4175316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 31298851 - 31298895
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| |||||||| |||||||||||||||    
T  31298851 tttacttgtgtcaataggaagttttctatatcaaaaaagcaattt 31298895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 22712199 - 22712265
Alignment:
Q  106 accgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||| ||||||| |||||  ||||||||||||||| |||| | |||  |||||||||||||||||    
T  22712199 accgctaggggcattaacatcatttacttgtgtcaataggaattattcattgtcaaaaaagcaattt 22712265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 44070815 - 44070750
Alignment:
Q  106 accgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaatt 171  Q
    |||||||| |||||  || |||||||||||||||||| ||||  ||||  ||||||||||||||||    
T  44070815 accgctggaggcatttacgtattttacttgtgtcaataggaatgtttcattgtcaaaaaagcaatt 44070750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 10602229 - 10602273
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | ||| ||||||||||||||||||    
T  10602229 tttacttgtgtcaataggaagtattcaatgtcaaaaaagcaattt 10602273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 24108451 - 24108515
Alignment:
Q  108 cgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||| | ||||||  ||||||||||||||| |||| | |||||||||| |||| ||||||    
T  24108451 cgctgggggtaaaaacatcatttacttgtgtcaataggaagtattctatgtcagaaaaacaattt 24108515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 31297686 - 31297642
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||    
T  31297686 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 31297642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 5927 - 5993
Alignment:
Q  106 accgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||| ||||  || |||||||||||||||||||| |||||||| |||||| |||||||||||    
T  5927 accgctgggagcatttacgtattttacttgtgtcaattgaaacttttcaatgtcagaaaagcaattt 5993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 44319932 - 44319866
Alignment:
Q  106 accgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||||| ||||||||||||||||  | | || |||||||||||||||||| |||||    
T  44319932 accgctgggggcataaatatattttacttgtgtctttagaaaattttctatgtcaaaaaagaaattt 44319866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 20495563 - 20495610
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  20495563 tattttacttgtgtcaatacgaagttttctatgtcaaaaaagcaattt 20495610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 26701874 - 26701831
Alignment:
Q  129 ttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||    
T  26701874 ttacttgtgtcaataggaagtttcctatgtcaaaaaagcaattt 26701831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 8036296 - 8036252
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||    
T  8036296 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 8036252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 40678292 - 40678336
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | ||||||||||||||| ||||||    
T  40678292 tttacttgtgtcaataggaagtattctatgtcaaaaaaacaattt 40678336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 45120758 - 45120802
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||| |  |||||||||||||||| |||||||||||    
T  45120758 tttacttgtgtcattgtgaacttttctatgtcagaaaagcaattt 45120802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 19877099 - 19877143
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  19877099 tttacttgtgtcaattggaacttttcaatgtcagaaaagcaattt 19877143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 23067695 - 23067739
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  23067695 tttacttgtgtcaattggaacttttcaatgtcagaaaagcaattt 23067739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 36759208 - 36759274
Alignment:
Q  106 accgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||  |  ||||||||||||||||||  ||| |||| |||||||||||||||||||    
T  36759208 accgctgggggcattcaggtattttacttgtgtcaatgtgaagttttttatgtcaaaaaagcaattt 36759274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 19870501 - 19870454
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||| | |||||| || |||||||||||||||||    
T  19870501 tattttacttgtgtcaatagtaactttcctttgtcaaaaaagcaattt 19870454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 26747739 - 26747696
Alignment:
Q  129 ttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||    
T  26747739 ttacttgtgtcaataggaagtttcctatgtcaaaaaagcaattt 26747696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 8214319 - 8214363
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | ||| ||||||||||||||||||    
T  8214319 tttacttgtgtcaataggaagtattcaatgtcaaaaaagcaattt 8214363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 16931284 - 16931328
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||| ||||||| |||| | ||||||||||||||||||||||    
T  16931284 tttacttatgtcaataggaaatattctatgtcaaaaaagcaattt 16931328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 22965776 - 22965820
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | ||| ||||||||||||||||||    
T  22965776 tttacttgtgtcaataggaagtattcaatgtcaaaaaagcaattt 22965820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 24170019 - 24170067
Alignment:
Q  124 atattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||||  |||||| || ||||||| ||||||||||    
T  24170019 atattttacttgtgtcaatgtgaacttatcaatgtcaagaaagcaattt 24170067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 39388456 - 39388412
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||||||||||| |||| |||||||||||||    
T  39388456 tttacttgtgtcaattggaacttttcaatgttaaaaaagcaattt 39388412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 22436086 - 22436039
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| ||||||||||||| |||||| |||||||||||    
T  22436086 tattttacttgtgtcgattggaacttttcaatgtcagaaaagcaattt 22436039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 35430565 - 35430499
Alignment:
Q  106 accgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||| |||||||||  |||||||||||||||  |  ||| ||||||||||||||||||||||||    
T  35430565 accgctgagggcataaatgtattttacttgtgtctttatgaaattttctatgtcaaaaaagcaattt 35430499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 22438608 - 22438655
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||||||| ||||| || || |||||||||||||||||    
T  22438608 tattttacttgtgtcaataggaacattcctttgtcaaaaaagcaattt 22438655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 51026034 - 51025991
Alignment:
Q  129 ttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||| |||| | ||||||||||||||||||||||    
T  51026034 ttacttgtgtcaataggaagtattctatgtcaaaaaagcaattt 51025991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 17931083 - 17931127
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| ||| |||||||| |||||||||||    
T  17931083 tttacttgtgtcaataggaagtttcctatgtcagaaaagcaattt 17931127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 21168463 - 21168419
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||    
T  21168463 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 21168419  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 45936652 - 45936608
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||    
T  45936652 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 45936608  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 49790663 - 49790619
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||    
T  49790663 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 49790619  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 51029611 - 51029655
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | |||||||||| |||||||||||    
T  51029611 tttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 51029655  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 22868437 - 22868480
Alignment:
Q  129 ttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    |||||||||||||| |||| ||||||||||||||||||||||||    
T  22868437 ttacttgtgtcaataggaagttttctatgtcaaaaaagcaattt 22868480  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 33523910 - 33523976
Alignment:
Q  106 accgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |  ||||||||||||||||||  |||||| || |||||| |||||||||||    
T  33523910 accgctgggggcatataggtattttacttgtgtcaatgtgaacttatcaatgtcataaaagcaattt 33523976  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 29268395 - 29268460
Alignment:
Q  107 ccgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||| ||||||||| |||||| |||| |||  |  ||||||||||||||||||||||||||||    
T  29268395 ccgctggaggcataaacgtatttttcttgcgtcgttatgaacttttctatgtcaaaaaagcaattt 29268460  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 5613844 - 5613797
Alignment:
Q  125 tattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||| |||||| |||||||| || |||||||||||||||||    
T  5613844 tattttacttgggtcaataggaactttcctttgtcaaaaaagcaattt 5613797  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 29266892 - 29266837
Alignment:
Q  117 cataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||| |||||||||||||||  |  ||||||||||||||||| ||||||||||    
T  29266892 cataaacgtattttacttgtgtctttatgaacttttctatgtcaagaaagcaattt 29266837  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 9094293 - 9094257
Alignment:
Q  102 aacaaccgctgggggcataaacatattttacttgtgt 138  Q
    |||||||||||||||||||||  ||||||||||||||    
T  9094293 aacaaccgctgggggcataaaagtattttacttgtgt 9094257  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 29230634 - 29230602
Alignment:
Q  107 ccgctgggggcataaacatattttacttgtgtc 139  Q
    ||||||||||||||||| |||||||||||||||    
T  29230634 ccgctgggggcataaacgtattttacttgtgtc 29230602  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 29232135 - 29232187
Alignment:
Q  109 gctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaa 161  Q
    ||||||||||||||  |||||||||||||||  |  |||||||||||||||||    
T  29232135 gctgggggcataaatgtattttacttgtgtctttatgaacttttctatgtcaa 29232187  T

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Target: scaffold0325 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 2881 - 2815
Alignment:
Q  106 accgctgggggcataaacatattttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||| |||||| ||| |||||||||| |||| ||  ||| ||||||||||||||||||||||||    
T  2881 accgctgtgggcattaacgtattttacttatgtctatatgaagttttctatgtcaaaaaagcaattt 2815  T

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Target: scaffold0004 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 130566 - 130610
Alignment:
Q  128 tttacttgtgtcaattggaacttttctatgtcaaaaaagcaattt 172  Q
    ||||||||||||||| |||| | ||||||||||||||||||||||    
T  130566 tttacttgtgtcaataggaagtattctatgtcaaaaaagcaattt 130610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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