View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0938_low_3 (Length: 610)

Name: NF0938_low_3
Description: NF0938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0938_low_3
NF0938_low_3
[»] chr3 (7 HSPs)
chr3 (97-452)||(45168609-45168964)
chr3 (531-580)||(45168481-45168530)
chr3 (535-584)||(43304142-43304191)
chr3 (536-584)||(3069059-3069107)
chr3 (542-584)||(43306856-43306898)
chr3 (535-584)||(3063921-3063970)
chr3 (535-568)||(53012882-53012915)
[»] chr8 (5 HSPs)
chr8 (535-584)||(22926831-22926880)
chr8 (535-584)||(22922035-22922084)
chr8 (537-577)||(6845195-6845235)
chr8 (541-578)||(23570449-23570486)
chr8 (535-584)||(42890253-42890302)
[»] chr6 (5 HSPs)
chr6 (535-584)||(3535891-3535940)
chr6 (535-584)||(3542102-3542151)
chr6 (535-584)||(29340991-29341040)
chr6 (541-581)||(30052064-30052104)
chr6 (541-581)||(30049777-30049817)
[»] chr2 (6 HSPs)
chr2 (535-584)||(2155823-2155872)
chr2 (535-584)||(2165779-2165828)
chr2 (535-582)||(31633960-31634007)
chr2 (535-584)||(15129274-15129323)
chr2 (535-584)||(22011288-22011337)
chr2 (535-571)||(33655482-33655518)
[»] chr1 (2 HSPs)
chr1 (535-582)||(8931080-8931126)
chr1 (535-584)||(50857629-50857678)
[»] chr7 (6 HSPs)
chr7 (535-584)||(1220617-1220666)
chr7 (535-577)||(13882876-13882918)
chr7 (535-584)||(859340-859389)
chr7 (535-584)||(1217344-1217393)
chr7 (535-577)||(13886378-13886420)
chr7 (535-584)||(4303305-4303354)
[»] chr4 (3 HSPs)
chr4 (533-584)||(24667541-24667592)
chr4 (542-584)||(6659514-6659556)
chr4 (546-584)||(22691178-22691216)
[»] scaffold0110 (2 HSPs)
scaffold0110 (541-584)||(45447-45490)
scaffold0110 (541-581)||(46892-46932)
[»] chr5 (2 HSPs)
chr5 (535-577)||(40778978-40779020)
chr5 (535-584)||(21849155-21849204)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 97 - 452
Target Start/End: Complemental strand, 45168964 - 45168609
Alignment:
Q  97 aaaaacaccgatcgggtcgtatcctccaataggttttgtgcgaccaagagttatggcccagtaaatatgagggcccgtagagctatcccataagtttgac 196  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  45168964 aaaaacaccgatcgggtcgtatcctccaatagattttgtgcgaccaagagttatggcccgataaatatgagggcccgtagagctatcccataagtctgac 45168865  T
Q  197 tctctttgaatagagatagtgtgaagcatttgttga----taatcactctttccttttgttttcctcatgaatcccaccattttcctatgtttag-aacc 291  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45168864 tctctttgaatagagatagtgtgaagcatttgttgataattaatcactctttccttttgttttcctcatgaatcccaccattttcctatgtttagaaacc 45168765  T
Q  292 ctaactctctttctctttgtgggttcaccgtaaaaagagagaaatgaatccacattttgagaaaggctcttttgggtccaatcaaaatgaaaaagacccc 391  Q
    |||||      ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  45168764 ctaac------tctctttgtgggttcaccgtaaaaagagagaaatgaatccacattttaagaaaggctgttttgggtccaatcaaaatgaaaaagacccc 45168671  T
Q  392 attttgatccccacaaagtgagaaaagcatgttctta-ccctctagatatgatgtacgaggg 452  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  45168670 attttgatccccacaaaatgagaaaagcatgttcttacccctctagatatgatgtaagaggg 45168609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 531 - 580
Target Start/End: Complemental strand, 45168530 - 45168481
Alignment:
Q  531 cagtccacgagtttgttatttctttcactatataagcagaagttatgcag 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45168530 cagtccacgagtttgttatttctttcactatataagcagaagttatgcag 45168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 43304191 - 43304142
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| ||||||    
T  43304191 ccacgggtttgttatttctttcactatataagcagaacttatgtagccta 43304142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 536 - 584
Target Start/End: Complemental strand, 3069107 - 3069059
Alignment:
Q  536 cacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||||    
T  3069107 cacgagtttgttatttctttcactatataagcataacttatgtagccta 3069059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 584
Target Start/End: Complemental strand, 43306898 - 43306856
Alignment:
Q  542 tttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  43306898 tttgttatttctttcactatataagcagaacttatgtagccta 43306856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 3063970 - 3063921
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| |||||||||||||||||||||||||||| || ||||| ||||||    
T  3063970 ccacgggtttgttatttctttcactatataagcataacttatgtagccta 3063921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 568
Target Start/End: Original strand, 53012882 - 53012915
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagca 568  Q
    ||||| ||||||||||||||||||||||||||||    
T  53012882 ccacgggtttgttatttctttcactatataagca 53012915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 22926880 - 22926831
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  22926880 ccacgggtttgttatttctttcactatataagcagaacttatgcagccta 22926831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 22922084 - 22922035
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  22922084 ccacgggtttgttatttctttcactatatatgcagaacttatgcagccta 22922035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 537 - 577
Target Start/End: Original strand, 6845195 - 6845235
Alignment:
Q  537 acgagtttgttatttctttcactatataagcagaagttatg 577  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  6845195 acgagtttgttatttctttcactatataagcagaacttatg 6845235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 578
Target Start/End: Original strand, 23570449 - 23570486
Alignment:
Q  541 gtttgttatttctttcactatataagcagaagttatgc 578  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  23570449 gtttgttatttctttcactatataagcggaacttatgc 23570486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 584
Target Start/End: Original strand, 42890253 - 42890302
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| |||||||||||||||||||| ||||||| || ||||| ||||||    
T  42890253 ccacgggtttgttatttctttcactacataagcaaaacttatgtagccta 42890302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 535 - 584
Target Start/End: Original strand, 3535891 - 3535940
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  3535891 ccacgggtttgttatttctttcactatataagcagaacttatgcagccta 3535940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 535 - 584
Target Start/End: Original strand, 3542102 - 3542151
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  3542102 ccacgggtttgttatttctttcactatataagcagaacttatgcagccta 3542151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 29341040 - 29340991
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| ||||||||||||  ||||||||||||||||| ||||||||||||    
T  29341040 ccacgggtttgttatttcaatcactatataagcagaacttatgcagccta 29340991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 581
Target Start/End: Original strand, 30052064 - 30052104
Alignment:
Q  541 gtttgttatttctttcactatataagcagaagttatgcagc 581  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  30052064 gtttgttatttctttcactatataagcaaaacttatgcagc 30052104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 581
Target Start/End: Original strand, 30049777 - 30049817
Alignment:
Q  541 gtttgttatttctttcactatataagcagaagttatgcagc 581  Q
    |||||||||||||||||||||||||||| || |||| ||||    
T  30049777 gtttgttatttctttcactatataagcaaaacttattcagc 30049817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 535 - 584
Target Start/End: Original strand, 2155823 - 2155872
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  2155823 ccacgtgtttgttatttctttcactatataagcagaacttatgcagccta 2155872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 535 - 584
Target Start/End: Original strand, 2165779 - 2165828
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  2165779 ccacgagtttgttatttctttcactatataaggagaacttatgcagccta 2165828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 535 - 582
Target Start/End: Original strand, 31633960 - 31634007
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagcc 582  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  31633960 ccacgagtttgttatttctttcactatataagtagaacttatgcagcc 31634007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 584
Target Start/End: Original strand, 15129274 - 15129323
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| ||||||    
T  15129274 ccacgggtttgttatttctttcactatataagcagaacttatgtagccta 15129323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 584
Target Start/End: Original strand, 22011288 - 22011337
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| || ||||||||||||||||||||||||| || ||||| ||||||    
T  22011288 ccacgggtctgttatttctttcactatataagcaaaacttatgtagccta 22011337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 571
Target Start/End: Original strand, 33655482 - 33655518
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaa 571  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  33655482 ccacgggtttgttatttctttcactatataaggagaa 33655518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 535 - 582
Target Start/End: Original strand, 8931080 - 8931126
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagcc 582  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8931080 ccacgagtttgttatttctttcactatataagcagaa-ttatgcagcc 8931126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 50857678 - 50857629
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||||||||    
T  50857678 ccacgggtttgttattactttcactatataagcagaacttatgcagccta 50857629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 1220666 - 1220617
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  1220666 ccacgagtttgttatttctttcactatataaacagaacttatgtagccta 1220617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 577
Target Start/End: Complemental strand, 13882918 - 13882876
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatg 577  Q
    ||||| ||||||||||||||||||||||||||||||| |||||    
T  13882918 ccacgggtttgttatttctttcactatataagcagaacttatg 13882876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 859389 - 859340
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||||||||||||||||||||||||||||| || || ||||| ||||||    
T  859389 ccacgagtttgttatttctttcactatataaacataacttatgtagccta 859340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 1217393 - 1217344
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||||||||||||||||||||||||||||| || || ||||| ||||||    
T  1217393 ccacgagtttgttatttctttcactatataaacataacttatgtagccta 1217344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 535 - 577
Target Start/End: Complemental strand, 13886420 - 13886378
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatg 577  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||    
T  13886420 ccacgggtttgttatttctttcactatataagctgaacttatg 13886378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 584
Target Start/End: Original strand, 4303305 - 4303354
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| ||||||||||||||||||||||||| ||| | ||||| ||||||    
T  4303305 ccacgggtttgttatttctttcactatataaacaggacttatgtagccta 4303354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 533 - 584
Target Start/End: Original strand, 24667541 - 24667592
Alignment:
Q  533 gtccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||| ||||||    
T  24667541 gtccacgggtttgttatttctttcattatataagcagaacttatgtagccta 24667592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 584
Target Start/End: Complemental strand, 6659556 - 6659514
Alignment:
Q  542 tttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  6659556 tttgttatttctttcactatataagcagaacttatgtagccta 6659514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 546 - 584
Target Start/End: Original strand, 22691178 - 22691216
Alignment:
Q  546 ttatttctttcactatataagcagaagttatgcagccta 584  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  22691178 ttatttctttcactatataagcagaacttatgtagccta 22691216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 541 - 584
Target Start/End: Complemental strand, 45490 - 45447
Alignment:
Q  541 gtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||    
T  45490 gtttattatttctttcactatataaggagaacttatgcagccta 45447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 581
Target Start/End: Complemental strand, 46932 - 46892
Alignment:
Q  541 gtttgttatttctttcactatataagcagaagttatgcagc 581  Q
    |||||||||||||||||||||||||||| || |||| ||||    
T  46932 gtttgttatttctttcactatataagcaaaacttatccagc 46892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 535 - 577
Target Start/End: Complemental strand, 40779020 - 40778978
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatg 577  Q
    ||||| |||| |||||||||||||||||||||||||| |||||    
T  40779020 ccacgtgtttattatttctttcactatataagcagaacttatg 40778978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 21849204 - 21849155
Alignment:
Q  535 ccacgagtttgttatttctttcactatataagcagaagttatgcagccta 584  Q
    ||||| |||||||||||||||||||||||||||  || ||||| ||||||    
T  21849204 ccacgggtttgttatttctttcactatataagcgaaacttatgtagccta 21849155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University