View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_high_11 (Length: 512)
Name: NF0939_high_11
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 69 - 502
Target Start/End: Original strand, 1823868 - 1824301
Alignment:
| Q |
69 |
aaaattttaagagagaaagatacattactagttatgtagtagaaaaatttatcatccatcttcaaccgtgatctatttggactatcattgtaacttggaa |
168 |
Q |
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| T |
1823868 |
aaaattttaagagagaaagatacattactagttatttagtagaaaactttatcatccatcatcaaccgtgatctatttggactatcattgtaacttggaa |
1823967 |
T |
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| Q |
169 |
aaatgttatattaattaattgtgtattttcttctcgttgaattggttaaatcatccaaatataatgtctatattaacattgaagaaatgttaatttaaca |
268 |
Q |
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| T |
1823968 |
aaatgttatattaattaattgtgtattttcttctcgttgaattggttaaatcatccaaatataatgtctatattaacattgaagaaattttaatttaaca |
1824067 |
T |
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| Q |
269 |
atatgcagcagcaaaacagtagatatctgaaacaagaaatccataagtttcaatgaatatgatatagtgtgaaagcaatcattcacattaagttttttcg |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1824068 |
atatgcagcagcaaaacagtagatatctgaaacaagaaatccataagtttcaatgaatatgatatagtgtgaaagcaatcattcacattaacttttttcg |
1824167 |
T |
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| Q |
369 |
gtttgattagcaaatatatagcatagtttttgcattaggatgaaaaatccataagtttcaatgaaacaatgatatatcaaacactctctcttacatttcc |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1824168 |
gtttgattagcaaatatatagcatagtttttgcattaggatgaaaaatccataagtttcaatgaaacaatgatatatcaaacactctctcttacatttcc |
1824267 |
T |
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| Q |
469 |
tttatgttatctgttggattttttgtcatctgtg |
502 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1824268 |
tttatgttatctgttggattttttgtcatctgtg |
1824301 |
T |
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