View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_high_19 (Length: 395)
Name: NF0939_high_19
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 29 - 384
Target Start/End: Original strand, 48478551 - 48478906
Alignment:
| Q |
29 |
acttggaacacactgtaaccaagtaatccatttttctttgcataagaaactttttctttaatagcttccacatcatcaaaattaacccatgaagattcaa |
128 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48478551 |
acttggaacacactgtaaccaagtaatccatttttctttgcataagaaactttttctttaatagcttccacatcatcaaaattaacccatgtagattcaa |
48478650 |
T |
|
| Q |
129 |
cagtgaaataattcaccacaaaagtgtcattataacgtgaaactactccatcaccaaagcctctgatgtaactttttataaacttataagccattgaacc |
228 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48478651 |
cagtgaaataattcaccacaaaagtgtcattataacgtgaaactactccatcaccaaagcctctgatgtaactttttataaacttataagccattgaacc |
48478750 |
T |
|
| Q |
229 |
atccattgtaatagcaggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcaaatccatgataaggcaaaccaattaca |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48478751 |
atccattgtaatagcaggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcaaatccatgataaggcaaaccaattaca |
48478850 |
T |
|
| Q |
329 |
agtttgttagaagaaaatcctctttttctccactctttgatacctgaatcagtatt |
384 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48478851 |
agtttgttagaagaaaatcctctttttctccactctttgatacctgaatcagtatt |
48478906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 29 - 384
Target Start/End: Original strand, 48470189 - 48470544
Alignment:
| Q |
29 |
acttggaacacactgtaaccaagtaatccatttttctttgcataagaaactttttctttaatagcttccacatcatcaaaattaacccatgaagattcaa |
128 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| |
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| T |
48470189 |
acttggaacacactgtaaccaagtaatccatttttctttgcataagaaactttttctttaatagcttccacatcatcaaaattaacccaagtagatgcaa |
48470288 |
T |
|
| Q |
129 |
cagtgaaataattcaccacaaaagtgtcattataacgtgaaactactccatcaccaaagcctctgatgtaactttttataaacttataagccattgaacc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
48470289 |
cagtgaaataattcaccacaaaagtgtcattataacgtgaaactactccatcaccaaagcctctaatgtaactttttataaacttataagacattgaacc |
48470388 |
T |
|
| Q |
229 |
atccattgtaatagcaggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcaaatccatgataaggcaaaccaattaca |
328 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
48470389 |
atccattgtaaaagcaggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcatatccatgataaggcaaaccaattaca |
48470488 |
T |
|
| Q |
329 |
agtttgttagaagaaaatcctctttttctccactctttgatacctgaatcagtatt |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
48470489 |
agtttgttagaagaaaatcctctttttctccactctttaatgcctgaatcagtatt |
48470544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 29 - 384
Target Start/End: Original strand, 48487017 - 48487375
Alignment:
| Q |
29 |
acttggaacacactgtaaccaagtaatccatttttctttgcataagaaactttttctttaatagcttccacatcatcaaaattaacccatgaag---att |
125 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||| | || || |
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|
| T |
48487017 |
acttggaaaacattgtaaccaagtaatccatttttctttgcataagatacttttactttaatagctttcacatcatcaaaattaacccaagtagtggatg |
48487116 |
T |
|
| Q |
126 |
caacagtgaaataattcaccacaaaagtgtcattataacgtgaaactactccatcaccaaagcctctgatgtaactttttataaacttataagccattga |
225 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||| |||||||||||| |||||||||| ||| || ||||||||||| ||||||||||||||||| |
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|
| T |
48487117 |
caacagtaaaataattcaccacaaaagtatcattataacatgaaactactccgtcaccaaagcttctaatataactttttatcaacttataagccattga |
48487216 |
T |
|
| Q |
226 |
accatccattgtaatagcaggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcaaatccatgataaggcaaaccaatt |
325 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
48487217 |
accatcctttgtaatagcaggaccagaagttggtttaccaacaccaccttcacctggtttcacaagtgtccaagcaaatccatgataaggcaaaccaatt |
48487316 |
T |
|
| Q |
326 |
acaagtttgttagaagaaaatcctctttttctccactctttgatacctgaatcagtatt |
384 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
48487317 |
acaagtttgtgagaagaaaatcctctttttctccactctttaatacctgaatcagtatt |
48487375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 43 - 384
Target Start/End: Complemental strand, 48883716 - 48883377
Alignment:
| Q |
43 |
gtaaccaagtaatccatttttctttgcataagaaactttttctttaatagcttccacatcatcaaaattaacccatgaagattcaacagtgaaataattc |
142 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| | |||| ||||||||||||||||| |
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|
| T |
48883716 |
gtaaccaagtaa-ccatttttctttgcataagaaaccttttctttaataacttccacatcatcaaaatta-cccaagtagatgcaacagtgaaataattc |
48883619 |
T |
|
| Q |
143 |
accacaaaagtgtcattataacgtgaaactactccatcaccaaagcctctgatgtaactttttataaacttataagccattgaaccatccattgtaatag |
242 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||||||| || |||| || |||||| || |||| |||||||| |||||||||||||||||||||||| |
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|
| T |
48883618 |
accacaaatgtctcattataatatgaaactactccatcatcagagccgctaatgtaatttgttatcgacttataacccattgaaccatccattgtaatag |
48883519 |
T |
|
| Q |
243 |
caggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcaaatccatgataaggcaaaccaattacaagtttgttagaaga |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48883518 |
caggaccagaagttggtctaccaacaccaccttcacctggtttcacaagtgtccatgcatatccatgataaggcaaaccaattacaagtttgttagaaga |
48883419 |
T |
|
| Q |
343 |
aaatcctctttttctccactctttgatacctgaatcagtatt |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48883418 |
aaatcctctttttctccactctttgatacctgaatcagtatt |
48883377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 29 - 253
Target Start/End: Complemental strand, 38817064 - 38816834
Alignment:
| Q |
29 |
acttggaacacactgtaaccaagtaatccatttttctttgcataagaaactttttctttaatagcttccacatcatcaaaattaacccatgaa------g |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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|
| T |
38817064 |
acttggaacacactgtaaccaagtaatccatttttctttgcataagaaactttttctttaatagcttccacatcatcaaaattaacccatgtactagtgg |
38816965 |
T |
|
| Q |
123 |
attcaacagtgaaataattcaccacaaaagtgtcattataacgtgaaactactccatcaccaaagcctctgatgtaactttttataaacttataagccat |
222 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| ||| ||||||||||| ||| |||||||||||| |
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|
| T |
38816964 |
atgcaacagtgaaataattcaccacaaaagcgtcattataacatgaaactactccatcaccagagcttctaatgtaacttttcatatacttataagccac |
38816865 |
T |
|
| Q |
223 |
tgaaccatccattgtaatagcaggaccagaa |
253 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
38816864 |
tgaaccatccattgtaaaagcaggaccagaa |
38816834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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