View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_high_23 (Length: 348)
Name: NF0939_high_23
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 29 - 256
Target Start/End: Complemental strand, 48667725 - 48667498
Alignment:
| Q |
29 |
agttagttcgaggcttgacaatgggttacgttgaaggagcagagtataaggaagggtggtttcgcatactggtaagaataattggactggcacttcctgg |
128 |
Q |
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| T |
48667725 |
agttagttcgaggcttgacaatgggttacgttgaaggagcagagtataaggaagggtggtttcgcatactggtaagaataattggactggcacttcctgg |
48667626 |
T |
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| Q |
129 |
tttttcggctcattgtcccacagattatgtcaactctatcagacttgggaaggaaagctccattcacatgtcttctatctaagaattctaagaagatctc |
228 |
Q |
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| T |
48667625 |
tttttcggctcattgtcccacagattatgtcaactctatcagacttgggaaggaaagctccattcacatgtcttctatctaagaattctaagaagatctc |
48667526 |
T |
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| Q |
229 |
tcatgtgttatgtcggccttgttctctg |
256 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
48667525 |
tcatgtgttatgtcggccttgttctctg |
48667498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 8600339 - 8600229
Alignment:
| Q |
62 |
aaggagcagagtataaggaagggtggtttcgcatactggtaagaataattggactggcacttcctggtttttcggctcattgtcccacagattatgtcaa |
161 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8600339 |
aaggagcagagtataaggaagggtggtttcgcatattggtaaggataataggactgttacttcctggtttttcggctcattgtcccacagattatgtcaa |
8600240 |
T |
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| Q |
162 |
ctctatcagac |
172 |
Q |
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|| |||||||| |
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| T |
8600239 |
ctttatcagac |
8600229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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