View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_high_30 (Length: 302)
Name: NF0939_high_30
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 32 - 295
Target Start/End: Original strand, 18606060 - 18606319
Alignment:
| Q |
32 |
ggaacatgatgataaaaggtaccatgtgtaaatcatactaaattgatctatcctttaacccctnnnnnnnnntgaacatcctttaaaataatatttcaat |
131 |
Q |
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| T |
18606060 |
ggaacatgatgatagaaggtaccatgtgtaaatcatactaaattgatctatcctttaacccctaaaaaaaa-tgaacatcctttaaaata---tttcaat |
18606155 |
T |
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| Q |
132 |
aataaaacatttaatccaaaataagaaccaatgaaagtcaaccacataactaacaacaaaattttggacaaacacattataatatatagattaatggtaa |
231 |
Q |
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| T |
18606156 |
aataaaacatttaatccaaaataagaaccaatgaaagtcaaccacataactaacagcaaaattttggacaaacacattataatatatagattaatggtaa |
18606255 |
T |
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| Q |
232 |
tcatattcatcaccatcctccacttaagtacgtatgttttgattcctccactttcttcatctca |
295 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18606256 |
tcgtattcatcaccatcctccacttaagtacgtatgttttgattcctccactttcttcttctca |
18606319 |
T |
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