View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_high_36 (Length: 263)
Name: NF0939_high_36
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 50070943 - 50070732
Alignment:
| Q |
28 |
cacctttggcttgagttagattctgttatggtagtccatgccttgaaatccaacactctaattctttggaggttaaggaacaaatggttcaattgttgtc |
127 |
Q |
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| T |
50070943 |
cacctttggcttgagttagattctgttatggtagtccatgccttgaaatccaacactctaattctttggaggttaaggaacaaatggttcaattgttgtc |
50070844 |
T |
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| Q |
128 |
aatggatagattctatgaannnnnnnctctcacatctatagagagggtaactaatgtgttgatgacttagcaaatattggtcttagcccgaatcaattca |
227 |
Q |
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| T |
50070843 |
aatggataggttctatgaatttttttctctcacatctatagagaggataactaatgtgttgatggcttagtaaatattggtcttaccccgaatcaattca |
50070744 |
T |
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| Q |
228 |
ctttgtggaatt |
239 |
Q |
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|||||||||||| |
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| T |
50070743 |
ctttgtggaatt |
50070732 |
T |
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