View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_high_37 (Length: 262)
Name: NF0939_high_37
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 43416264 - 43416522
Alignment:
| Q |
1 |
caccaacgatataacacttcttacg---cgctcacgaaatatactctaacatttgcttggatttgtggtagctaataaaagtgtggggatcttcactaat |
97 |
Q |
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| T |
43416264 |
caccaacaatataacacttcttactactcgctcacgaaatatactctaacatttgcttggatttgtggtagctaataaaagtgtggggatcttcactaat |
43416363 |
T |
|
| Q |
98 |
actgaatgatgaatcactatagtaaaacatatgacagaaaactttgaagacaatgattaaatgaatatatattttaactaccctttctactagtaatgat |
197 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43416364 |
actgaatgatgaatcactatagtaaaacatatgatagaaaactttgaagacaatgattaaatgaatatatattttaactaccctttctcctagtaatgat |
43416463 |
T |
|
| Q |
198 |
ggtttttactttacctgttttctatttatgctgtacaactgtttagctcccatattctt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43416464 |
ggtttttactttacctgttttctatttatgctgtacaactgtttagctcccattttctt |
43416522 |
T |
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