View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0939_high_38 (Length: 258)
Name: NF0939_high_38
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_high_38 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 35234109 - 35233922
Alignment:
| Q |
29 |
atttatttactaccgaaaataatcattcagctagatcatttgtttctcctctaacaaaaacttcatttgttcacctcgtaaagttttatagccacacaac |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35234109 |
atttatttactaccgaaaataatcattcagctagatcatttgtttctcctctga-aaaaacttcatttgttcacctcgtaaagttttatacccacacaac |
35234011 |
T |
|
| Q |
129 |
taatcaaatatgtggtatgcttccccaaattgaaagagaccacatagccgtttttcgagaatatatcatcattattcagtattatacat |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35234010 |
taatcaaatatgtggtatgcttcctcaaattgaaagagaccacatagccgtttttcgagaatatatcatcattattcagtattatacat |
35233922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University