View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0939_high_39 (Length: 251)

Name: NF0939_high_39
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0939_high_39
NF0939_high_39
[»] chr7 (2 HSPs)
chr7 (193-251)||(30594563-30594620)
chr7 (149-224)||(6891807-6891883)
[»] chr4 (1 HSPs)
chr4 (85-139)||(21348976-21349030)
[»] chr3 (2 HSPs)
chr3 (85-139)||(50723560-50723614)
chr3 (85-139)||(50789235-50789289)
[»] chr8 (2 HSPs)
chr8 (85-139)||(27567877-27567931)
chr8 (20-61)||(27567961-27568002)
[»] chr1 (1 HSPs)
chr1 (90-139)||(21653419-21653466)


Alignment Details
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 30594620 - 30594563
Alignment:
Q  193 tatggagcaaactgggaaatttcaaagaagcaatattcaaggtaacgaggttttgaatc 251  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||    
T  30594620 tatggagcaaactgggaaatttcaaagaagcaata-tcaaagtaatgaggttttgaatc 30594563  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 6891807 - 6891883
Alignment:
Q  149 ttgtccatattgtcatggtggtgaaaaaattcatga-tgttaagttatggagcaaactgggaaatttcaaagaagca 224  Q
    |||||||| ||||||||||||||| ||||||| ||| | | | ||| | |||||| ||||| |||||||||||||||    
T  6891807 ttgtccatgttgtcatggtggtgacaaaattcctgactttcatgttcttgagcaagctgggcaatttcaaagaagca 6891883  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 21349030 - 21348976
Alignment:
Q  85 gcacaacaaaataggaaaaataacaatgagaaagtactaaacatcatcatttctc 139  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| || |||||||    
T  21349030 gcacaagaaaataggaaaaataacaatgagaaagtattaaacattattatttctc 21348976  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 50723560 - 50723614
Alignment:
Q  85 gcacaacaaaataggaaaaataacaatgagaaagtactaaacatcatcatttctc 139  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| || |||||||    
T  50723560 gcacaagaaaataggaaaaataacaatgagaaagtaataaacattattatttctc 50723614  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 50789289 - 50789235
Alignment:
Q  85 gcacaacaaaataggaaaaataacaatgagaaagtactaaacatcatcatttctc 139  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| || |||||||    
T  50789289 gcacaagaaaataggaaaaataacaatgagaaagtaataaacattattatttctc 50789235  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 27567931 - 27567877
Alignment:
Q  85 gcacaacaaaataggaaaaataacaa-tgagaaagtactaaacatcatcatttctc 139  Q
    |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||    
T  27567931 gcacaagaaaataggaaaa-taacaaatgagaaagtactaaacatcatcatttctc 27567877  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 27568002 - 27567961
Alignment:
Q  20 tgagaaattcaaaatgagttttggccacgctatgcagtcaaa 61  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  27568002 tgagaaattcaaaatgagtcttggccacgctatgtagtcaaa 27567961  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 21653419 - 21653466
Alignment:
Q  90 acaaaataggaaaaataacaatgagaaagtactaaacatcatcatttctc 139  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  21653419 acaaaataggaaaaataacaatgag-aagtactaaa-atcatcatttctc 21653466  T

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