View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0939_high_6 (Length: 627)
Name: NF0939_high_6
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 306 - 617
Target Start/End: Complemental strand, 2101806 - 2101494
Alignment:
| Q |
306 |
taataacactggttacaccaccaaaaactta-gacacataagattcaaatcgggtaaaagtgttcacacctaacatgtgtagtgtctaataagttagttc |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2101806 |
taataacactggttacaccaccaaaaacttaagacacataagattcaaatcgggtaaaagtgt-cacacctaacatgtgtagtgtctaataaattagttc |
2101708 |
T |
|
| Q |
405 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaa-tcatataagccggtaaatataaactataagctcatgaaaacgtg |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
2101707 |
aactaaagctacaaggttaaaattgagaatgaaaaatgataaaggttataaaaaaatcatataagcctgtaaatataaactataagctcgtgaaaacgtg |
2101608 |
T |
|
| Q |
504 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2101607 |
aaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaatttgcggtttgccaaacagatcctaatcattcataaatgaagaagatgaac |
2101508 |
T |
|
| Q |
604 |
gattcacctctctg |
617 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2101507 |
gattcacctctctg |
2101494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 87 - 311
Target Start/End: Complemental strand, 2102306 - 2102059
Alignment:
| Q |
87 |
attcacccgactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgc |
186 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2102306 |
attcacccgactcccatctgcagaacgaagaacagctccagcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgc |
2102207 |
T |
|
| Q |
187 |
tgcaagattttgtttatg-ttacttcatag---------------------ataaacctta-gagttaaacatgacgggcaactccttatagaggatatc |
263 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
2102206 |
tgcaagattttgtttatgtttacttcatagataaaatagagttatcatgatataaaccttaggagttaaacatgatgggcaacgccttatagaggatatc |
2102107 |
T |
|
| Q |
264 |
aatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2102106 |
aatacattaggatgacatttgaagtgtaatgtagtgtataaataataa |
2102059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 2106297 - 2106201
Alignment:
| Q |
95 |
gactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaa |
191 |
Q |
| |
|
||||||||||| ||||||| || | |||||||||||||| ||| ||||| ||||||| ||| |||||||| |||||||| |||||| ||||||| |
|
|
| T |
2106297 |
gactcccatcttcagaacgcagtatagctccggcaccagctggtccgggattcccactggctgcaccatcaaactcaaggatacaagaaagctgcaa |
2106201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 2097810 - 2097714
Alignment:
| Q |
95 |
gactcccatctgcagaacggagaacagctccggcaccagaccttccaggatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaa |
191 |
Q |
| |
|
||||||||||| ||||||| || | |||||||||||||| ||| ||||| || |||| ||| |||||||| |||||||| |||||| ||||||| |
|
|
| T |
2097810 |
gactcccatcttcagaacgcagtatagctccggcaccagctggtccgggattcccgctggctgcaccatcaaactcaaggatacaagaaagctgcaa |
2097714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 2041794 - 2041741
Alignment:
| Q |
138 |
tccaggatttccactggatgctccatcaaattcaaggatgcaagaacgctgcaa |
191 |
Q |
| |
|
||||||||||||||| || || |||||||||| |||||| ||||||| |||||| |
|
|
| T |
2041794 |
tccaggatttccacttgacgcaccatcaaattgaaggatacaagaactctgcaa |
2041741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 5e-67; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 39183730 - 39183883
Alignment:
| Q |
44 |
tttgatatattgtataatgcaaaaatgatttgatggatagagtattcacccgactcccatctgcagaacggagaacagctccggcaccagaccttccagg |
143 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
39183730 |
tttgacatattgtatagtgcaaaaatgatttgatggatagagtattcacccgactcccatctgcagaacgcagaacagctcctgcaccagaccttccagg |
39183829 |
T |
|
| Q |
144 |
atttccactggatgctccatcaaattcaaggatgcaagaacgctgcaagatttt |
197 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
39183830 |
atttccactggatgctccatcaaattctaggatacaagaacgctgcaagatttt |
39183883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 462 - 588
Target Start/End: Original strand, 39184928 - 39185054
Alignment:
| Q |
462 |
atataagccggtaaatataaactataagctcatgaaaacgtgaaaattacaaaacaaaacttttttaaaagcttatgaaacataatccaaattttcggtt |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
39184928 |
atataagccggtaaatataaactataagctcttgaaaacgtgaaaattacaaaacaaaactcttttaaaagcttataaaacataatccaaatttgcggtt |
39185027 |
T |
|
| Q |
562 |
tgccaaacagatcctaatcattcataa |
588 |
Q |
| |
|
||||||||||||||||| |||| |||| |
|
|
| T |
39185028 |
tgccaaacagatcctaaccattgataa |
39185054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 39184848 - 39184892
Alignment:
| Q |
402 |
ttcaactaaagctacaaggttaaaattgagaatgaaaaatgataa |
446 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39184848 |
ttcaattaaagctacaaggttaaaattgagaatgaaaaatgataa |
39184892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 39184394 - 39184433
Alignment:
| Q |
306 |
taataacactggttacaccaccaaaaacttagacacataa |
345 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39184394 |
taataacactagttacaccaccaaaaacttagacacataa |
39184433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 39183930 - 39183970
Alignment:
| Q |
226 |
gagttaaacatgacgggcaactccttatagaggatatcaat |
266 |
Q |
| |
|
|||||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
39183930 |
gagttaaatacgacgggcaacaccttatagaggatatcaat |
39183970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 4952169 - 4952228
Alignment:
| Q |
161 |
catcaaattcaaggatgcaagaacgctgcaagattttgtttatgttacttcatagataaa |
220 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4952169 |
catcaaattcaaggatacaagaacgctgcaagattttgtttatgttatctcataaataaa |
4952228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University