View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0939_high_7 (Length: 619)

Name: NF0939_high_7
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0939_high_7
NF0939_high_7
[»] chr3 (12 HSPs)
chr3 (22-390)||(26799266-26799633)
chr3 (417-619)||(26799064-26799266)
chr3 (67-163)||(27024816-27024911)
chr3 (67-163)||(12718113-12718209)
chr3 (67-163)||(27036073-27036168)
chr3 (87-163)||(51328498-51328574)
chr3 (67-158)||(10494233-10494325)
chr3 (62-163)||(9127445-9127544)
chr3 (62-163)||(9135552-9135651)
chr3 (70-163)||(29582752-29582845)
chr3 (18-83)||(27024921-27024981)
chr3 (62-163)||(16483272-16483371)
[»] scaffold0001 (1 HSPs)
scaffold0001 (22-163)||(426732-426873)
[»] chr4 (10 HSPs)
chr4 (210-373)||(44255477-44255638)
chr4 (72-163)||(16741327-16741418)
chr4 (70-151)||(52598751-52598832)
chr4 (70-166)||(37397473-37397569)
chr4 (163-219)||(44254595-44254651)
chr4 (114-163)||(6404622-6404671)
chr4 (62-152)||(53269806-53269894)
chr4 (62-163)||(55612005-55612104)
chr4 (114-163)||(30452915-30452964)
chr4 (22-58)||(49604846-49604882)
[»] scaffold0160 (1 HSPs)
scaffold0160 (22-163)||(16780-16916)
[»] chr2 (5 HSPs)
chr2 (66-163)||(37127447-37127544)
chr2 (25-138)||(26414940-26415048)
chr2 (79-163)||(21484799-21484883)
chr2 (521-569)||(40410206-40410254)
chr2 (66-160)||(41254832-41254923)
[»] chr5 (13 HSPs)
chr5 (70-163)||(25723979-25724072)
chr5 (67-163)||(23344333-23344427)
chr5 (67-158)||(28334858-28334949)
chr5 (70-159)||(22407029-22407118)
chr5 (72-163)||(27689951-27690042)
chr5 (70-158)||(22416867-22416955)
chr5 (110-163)||(10134433-10134486)
chr5 (73-163)||(8242534-8242624)
chr5 (62-163)||(32747258-32747357)
chr5 (67-159)||(8840961-8841053)
chr5 (70-163)||(36520229-36520318)
chr5 (62-150)||(24855535-24855621)
chr5 (355-399)||(38433096-38433140)
[»] chr1 (7 HSPs)
chr1 (66-163)||(21535330-21535428)
chr1 (70-163)||(28639472-28639565)
chr1 (72-163)||(35989552-35989643)
chr1 (122-163)||(41933047-41933088)
chr1 (65-163)||(4851752-4851848)
chr1 (125-163)||(10222899-10222937)
chr1 (89-153)||(34286686-34286750)
[»] chr6 (3 HSPs)
chr6 (71-163)||(20819049-20819141)
chr6 (21-126)||(19624466-19624566)
chr6 (74-163)||(28547349-28547438)
[»] scaffold0054 (1 HSPs)
scaffold0054 (82-163)||(18570-18651)
[»] scaffold0210 (1 HSPs)
scaffold0210 (67-163)||(7689-7785)
[»] chr8 (3 HSPs)
chr8 (70-160)||(32123968-32124058)
chr8 (62-163)||(11347-11446)
chr8 (78-155)||(21268552-21268629)
[»] chr7 (8 HSPs)
chr7 (70-163)||(18500854-18500947)
chr7 (67-163)||(26187751-26187848)
chr7 (62-163)||(38257090-38257189)
chr7 (62-163)||(38264665-38264764)
chr7 (87-156)||(18043494-18043563)
chr7 (67-162)||(1377871-1377966)
chr7 (62-163)||(35584683-35584782)
chr7 (70-114)||(6056165-6056209)
[»] scaffold0048 (1 HSPs)
scaffold0048 (128-163)||(52337-52372)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 22 - 390
Target Start/End: Complemental strand, 26799633 - 26799266
Alignment:
Q  22 atagatagatagatgcaaagaggttctaactctttatttgtcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  26799633 atagatagatagatgcaaagaggttctaactctttatttgtcaaaaataccaagaggttgctattagctagatcttggtgccttgacgatataaatatat 26799534  T
Q  122 tagttggcaaggcagcatgatctaactcaaaacaatcctcttaaatccaattattttgaaagatgagcacgaaaagaggggtacatgataaatctaacat 221  Q
     |||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  26799533 cagttggcaaggcagcatgatctaactcaaaacaatcatcttaaacccaattagtttgaaagatgagcacgaaaataggggtacatgataaatctaacat 26799434  T
Q  222 tgttaaatttcaaaaatcctttcaatagtattccagattgcaagtccttttcgttatgggttgcagcagttcaaattaaagtaatcttcaatttagccaa 321  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  26799433 tgttaaatttcgaaaaccctttcaatagtattccagattgcaagtcctttttgttatgggttgcagtagttcaaattaaagtaatcttcaatttagccaa 26799334  T
Q  322 agtaaaaacaattaggaaatcattcccgatgagttatggtttacaattttggtcacagtcactggaaaa 390  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26799333 agtaaaaacaattatg-aatcattcccgatgagttatggtttacaattttggtcacactcactggaaaa 26799266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 417 - 619
Target Start/End: Complemental strand, 26799266 - 26799064
Alignment:
Q  417 aaatcacaaataaggataaaatgggaattttttatgctttgcagggtgcatgtatagatgtagagttatagggtaaactttccctaaatctaatggtgtt 516  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26799266 aaatcacaaataggaataaaatgggaattttttatgctttgtagggtgcatgtatggatgtagagttatagggtaaactttccctaaatctaatggtgtt 26799167  T
Q  517 atatccagataattacaagtttcccttgaggacatatgtccaggtgaaaacctaagtgcaaaaaaccatatttgttccttatatatataataatgcatag 616  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||    
T  26799166 atatccagataattacaagtttcccttgaggacatctgtccaggtgaaaacctaagtgtaaaaaaccatatttgttccttatataaatactaatgcacag 26799067  T
Q  617 tgt 619  Q
    |||    
T  26799066 tgt 26799064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 27024911 - 27024816
Alignment:
Q  67 aataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||||||||||||| || |||||||||||| | ||||| || ||||||||||| |||||||||||||||| |||||||||||||| |||||||||    
T  27024911 aataccaagaggttgccatgagctagatcttgcttccttggca-tataaatatctcagttggcaaggcagcaggatctaactcaaaataatcctctt 27024816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 12718209 - 12718113
Alignment:
Q  67 aataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||||| |||||||||| ||||||||  ||||||||   |||||||||||||| ||||||||||| ||||  |||||||| ||||||||||||||    
T  12718209 aataccaataggttgctatgagctagataatggtgcctcagcaatataaatatctaagttggcaaggtagcagaatctaacttaaaacaatcctctt 12718113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 27036168 - 27036073
Alignment:
Q  67 aataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    ||||||| |||||||| || |||||||||||| | ||||| | |||||||||||  ||||||||||| |||| ||||||||||||||||||||||||    
T  27036168 aataccaggaggttgccatgagctagatcttgcttccttggcgatataaatatcc-agttggcaagggagcaggatctaactcaaaacaatcctctt 27036073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 51328498 - 51328574
Alignment:
Q  87 agctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||||||||||||||||| | ||| |||||||| ||||||||| |||||| |||||||||||||| |||||||||    
T  51328498 agctagatcttggtgccttggcgatagaaatatctaagttggcaatgcagcacgatctaactcaaaaaaatcctctt 51328574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 10494233 - 10494325
Alignment:
Q  67 aataccaagaggtt-gctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatc 158  Q
    |||||||||||||| ||||| || |||||| || |||| || | ||| |||||||| |||||||||||||||| |||||||||||||||||||    
T  10494233 aataccaagaggtttgctatgagttagatcatgctgccgtggcgatagaaatatctcagttggcaaggcagcaagatctaactcaaaacaatc 10494325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 9127544 - 9127445
Alignment:
Q  62 tcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctc 161  Q
    ||||||||| |||||||||||||| || ||||||||| |||||  || | || ||||| | | ||||||||||||||||||||||||||||  |||||||    
T  9127544 tcaaaaatatcaagaggttgctatgagttagatcttgctgcct--accagatgaatatgtcatttggcaaggcagcatgatctaactcaaagaaatcctc 9127447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 9135651 - 9135552
Alignment:
Q  62 tcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctc 161  Q
    ||||||||| |||||||||||||| || ||||||||| |||||  || | || ||||| | | ||||||||||||||||||||||||||||  |||||||    
T  9135651 tcaaaaatatcaagaggttgctatgagttagatcttgctgcct--accagatgaatatgtcatttggcaaggcagcatgatctaactcaaagaaatcctc 9135554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 29582845 - 29582752
Alignment:
Q  70 accaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    ||||||| |||||||  | | |||||||| |||| ||||||||||||||| | |||||||||| || ||| |||||||| ||||||||| ||||    
T  29582845 accaagatgttgctacgaaccagatcttgctgccctgacaatataaatatgtcagttggcaagacaacataatctaacttaaaacaatcatctt 29582752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 27024981 - 27024921
Alignment:
Q  18 atagatagatagatagatgcaaagaggttctaactctttatttgtcaaaaataccaagaggttgct 83  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||     |||||||||||||||||    
T  27024981 atagatagatagatagatacaaagaggttataaatctttatttg-----aataccaagaggttgct 27024921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 16483371 - 16483272
Alignment:
Q  62 tcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctc 161  Q
    ||||||||| |||||||||||||| || ||||||||| |||||   ||| || ||||| | | ||| |||||||||| ||||||| |||||  |||||||    
T  16483371 tcaaaaatatcaagaggttgctatgagttagatcttgctgcct--gcaagatgaatatgtcatttgacaaggcagcaggatctaagtcaaagaaatcctc 16483274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 426732 - 426873
Alignment:
Q  22 atagatagatagatgcaaagaggttctaactctttatttgtcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatct 121  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | ||||||||||||    
T  426732 atagatagatagatacaaagaggttctaactctttatttgtcaaaaataccaagaggttgctatgagccagatcttggtgccttggcgatataaatatct 426831  T
Q  122 tagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
      |||||||||||| |||||||||||||||||||||||||||    
T  426832 ctgttggcaaggcaacatgatctaactcaaaacaatcctctt 426873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 210 - 373
Target Start/End: Original strand, 44255477 - 44255638
Alignment:
Q  210 taaatctaacattgttaaatttcaaaaatcctttcaatagtattccagattgcaagtccttttcgttatgggttgcagcagttcaaattaaagtaatctt 309  Q
    ||||| |||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||| |||||||||||| | ||||||||||| |||||||||    
T  44255477 taaatttaacattgttaaatttcaaaaacccttccaattgtattccggattgcaagtccttttggttatgggttgcggtagttcaaattagagtaatctt 44255576  T
Q  310 caatttagccaaagtaaaaacaattaggaaatcattcccgatgagttatggtttacaattttgg 373  Q
    |||||||||||| ||||||  ||||||||||||||| |||| || ||||||||| |||||||||    
T  44255577 caatttagccaacgtaaaa--aattaggaaatcatttccgaagaattatggtttgcaattttgg 44255638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 16741327 - 16741418
Alignment:
Q  72 caagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||||||| ||| |||||||| ||| ||||||| || || |||||| | |||| ||||||||||||||||||||||||||||||||||||    
T  16741327 caagaggttgttatgagctagattttgttgccttggcattagaaatatgtcagtttgcaaggcagcatgatctaactcaaaacaatcctctt 16741418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 52598832 - 52598751
Alignment:
Q  70 accaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaa 151  Q
    |||||||||||||| | |||||||||||| ||||||| |||||||||||| | ||||||||||||| |  ||||||||||||    
T  52598832 accaagaggttgctctgagctagatcttgctgccttggcaatataaatatgtcagttggcaaggcaacgcgatctaactcaa 52598751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 37397473 - 37397569
Alignment:
Q  70 accaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctcttaaa 166  Q
    ||||||| |||| ||| ||| |||||||| |||||||  |||| |||||| | |||||||||| |  ||||||||||||||||||||| ||||||||    
T  37397473 accaagatgttgttatgagccagatcttgttgccttggaaatagaaatatgtcagttggcaagacgtcatgatctaactcaaaacaattctcttaaa 37397569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 44254595 - 44254651
Alignment:
Q  163 taaatccaattattttgaaagatgagcacgaaaagaggggtacatgataaatctaac 219  Q
    |||||||||||  |||||||||||||||||||||||||||||||| |||||| ||||    
T  44254595 taaatccaattggtttgaaagatgagcacgaaaagaggggtacataataaatttaac 44254651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 6404622 - 6404671
Alignment:
Q  114 aaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||| | ||||||||| |||||||||||||||||||||||||||||||    
T  6404622 aaatatgtcagttggcaaagcagcatgatctaactcaaaacaatcctctt 6404671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 53269894 - 53269806
Alignment:
Q  62 tcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaa 152  Q
    ||||||||| |||||||||||||| || |||||| || || ||   | | || ||||| ||| ||||||||||||||||||||||||||||    
T  53269894 tcaaaaatatcaagaggttgctatgagttagatcgtgctgtctg--ccagatgaatatgttatttggcaaggcagcatgatctaactcaaa 53269806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 55612005 - 55612104
Alignment:
Q  62 tcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctc 161  Q
    ||||||||| |||||||||||||| || ||||||||| |||||   ||| || ||||| | | ||| |||||||||| ||||||| |||||  |||||||    
T  55612005 tcaaaaatatcaagaggttgctatgagttagatcttgctgcct--gcaagatgaatatgtcatttgacaaggcagcaggatctaagtcaaagaaatcctc 55612102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 30452964 - 30452915
Alignment:
Q  114 aaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||| | |||||||||| || | |||||||||||||||||||||||||    
T  30452964 aaatatgtcagttggcaagacaacgtgatctaactcaaaacaatcctctt 30452915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 49604882 - 49604846
Alignment:
Q  22 atagatagatagatgcaaagaggttctaactctttat 58  Q
    |||||||||||||| |||||||| |||||||||||||    
T  49604882 atagatagatagatacaaagaggctctaactctttat 49604846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 16780 - 16916
Alignment:
Q  22 atagatagatagatgcaaagaggttctaactctttatttgtcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatct 121  Q
    |||||||||||||| ||||||||||||||||||||| |||     ||||| ||||||||||||| |||||||||||||||||||| | ||||||||||||    
T  16780 atagatagatagatacaaagaggttctaactctttagttg-----aatacaaagaggttgctatgagctagatcttggtgccttggcgatataaatatct 16874  T
Q  122 tagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
      ||||||||||||||| ||||||||||||||||||||||||    
T  16875 cggttggcaaggcagcaagatctaactcaaaacaatcctctt 16916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 37127447 - 37127544
Alignment:
Q  66 aaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| || ||  |||||||||||||||||||||||    
T  37127447 aaataccaagaggttgctatgagctagatcttggtgccttggcgatataaatatcttagttggcaagacaacaatatctaactcaaaacaatcctctt 37127544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 26414940 - 26415048
Alignment:
Q  25 gatagatagatgcaaagaggttctaactctttatttgtcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttag 124  Q
    ||||||||||| ||||||||||||||||||||||||     |||||||||||||||||||| || ||||||||  ||||||| | ||||||||||||||     
T  26414940 gatagatagatccaaagaggttctaactctttattt-----aaataccaagaggttgctatgagttagatcttattgccttggcgatataaatatcttaa 26415034  T
Q  125 ttggcaaggcagca 138  Q
    ||||||||||||||    
T  26415035 ttggcaaggcagca 26415048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 21484799 - 21484883
Alignment:
Q  79 ttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    ||||||| |||||||||||||||||||  ||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  21484799 ttgctatgagctagatcttggtgccttagcaatagaaatatctcagttgacaaggcagcaggatctaactcaaaacaatcctctt 21484883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 521 - 569
Target Start/End: Original strand, 40410206 - 40410254
Alignment:
Q  521 ccagataattacaagtttcccttgaggacatatgtccaggtgaaaacct 569  Q
    |||||| ||||||||| |||||||||||||| |||||||||||| ||||    
T  40410206 ccagattattacaagtgtcccttgaggacatttgtccaggtgaagacct 40410254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 41254923 - 41254832
Alignment:
Q  66 aaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcct 160  Q
    |||||||||||||||| ||| || |||||| || ||| |   ||||| |||||| | |||||||||| || || || ||||||||||||||||||    
T  41254923 aaataccaagaggttgttatgagttagatcgtgatgcat---caatagaaatatgtcagttggcaagacaacaagagctaactcaaaacaatcct 41254832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 25723979 - 25724072
Alignment:
Q  70 accaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||||||||||||| |||||||||||| ||| ||| |||||||||||| | |||||||||||||||| ||||||||||||||||||||||||    
T  25723979 accaagaggttgctatgagctagatcttgttgctttggcaatataaatatgtcagttggcaaggcagcaagatctaactcaaaacaatcctctt 25724072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 23344333 - 23344427
Alignment:
Q  67 aataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    ||||||||||||||||||| |||||||||||| ||||||| | |||||||||||| ||||||||||||| |||||||||||||  ||||||||||||    
T  23344333 aataccaagaggttgctatgagctagatcttgctgccttggcgatataaatatctcagttggcaaggcaacatgatctaactc--aacaatcctctt 23344427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 28334949 - 28334858
Alignment:
Q  67 aataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatc 158  Q
    ||||||||||||||||||| || ||||||||| | ||||||| |||| |||||||||||||||||| ||||| |||||||||||||||||||    
T  28334949 aataccaagaggttgctatgagttagatcttgctaccttgacgatattaatatcttagttggcaagacagcaagatctaactcaaaacaatc 28334858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 22407029 - 22407118
Alignment:
Q  70 accaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcc 159  Q
    ||||||||||| |||| ||||| |||||| |||||||||||||||||||| | |||||||||||||  ||||||||||||||||||||||    
T  22407029 accaagaggtttctatgagctatatcttgttgccttgacaatataaatatgtcagttggcaaggcaaaatgatctaactcaaaacaatcc 22407118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 27689951 - 27690042
Alignment:
Q  72 caagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||||||||||| || ||||||||| ||||||| | | |||||||||| ||| ||||||||| |||||||||||| ||||||||||||||    
T  27689951 caagaggttgctatgagttagatcttgctgccttggcgacataaatatctcagtaggcaaggcatcatgatctaacttaaaacaatcctctt 27690042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 22416867 - 22416955
Alignment:
Q  70 accaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatc 158  Q
    ||||||||||| |||| || || |||||| ||||||||||||| |||||| | ||||| ||||||| | ||||||||||||||||||||    
T  22416867 accaagaggtttctatgagttatatcttgttgccttgacaatagaaatatgtcagttgacaaggcaacgtgatctaactcaaaacaatc 22416955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 10134433 - 10134486
Alignment:
Q  110 atataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| ||||||||    
T  10134433 atataagtatctcagttggcaaggcagcatgatctaactcaaaacgatcctctt 10134486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 8242534 - 8242624
Alignment:
Q  73 aagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||| |||||||| ||||||||| || ||||||| || ||||  ||| | ||||||||| ||||||  |||||||||||||||||||||||    
T  8242534 aagaagttgctatgagctagatcctgttgccttggcattatacctatgtcagttggcaatgcagcaatatctaactcaaaacaatcctctt 8242624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 32747357 - 32747258
Alignment:
Q  62 tcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctc 161  Q
    ||||||||| |||||||||||||| || ||||||||| |||||   | | || ||||| | | ||||||||||||||||||||||||||||  |||||||    
T  32747357 tcaaaaatatcaagaggttgctatgagttagatcttgttgcctg--ccagatgaatatgtcatttggcaaggcagcatgatctaactcaaagaaatcctc 32747260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 8841053 - 8840961
Alignment:
Q  67 aataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcc 159  Q
    ||||| |||||||| |||| ||||||||| || | ||||| |||||||  ||| | |||||| |||||| ||| |||||||||||||||||||    
T  8841053 aatactaagaggtttctataagctagatcgtgtttccttggcaatatacctatgtcagttggaaaggcaacataatctaactcaaaacaatcc 8840961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 36520229 - 36520318
Alignment:
Q  70 accaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    ||||||| |||||||| |||||||| ||| ||||||| |||||||||| | | |||||| |||||| |||   |||||||||||||||||||||    
T  36520229 accaagatgttgctatgagctagatattgttgccttg-caatataaatttgtaagttggtaaggcaacat---ctaactcaaaacaatcctctt 36520318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 24855535 - 24855621
Alignment:
Q  62 tcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactca 150  Q
    ||||||||| |||||||||||||| || ||||||||| |||||  || | || ||||| | | |||||||||||||| |||||||||||    
T  24855535 tcaaaaatatcaagaggttgctatgagttagatcttgctgcct--accagatgaatatgtcatttggcaaggcagcaggatctaactca 24855621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 399
Target Start/End: Original strand, 38433096 - 38433140
Alignment:
Q  355 ttatggtttacaattttggtcacagtcactggaaaacttgtacat 399  Q
    |||||||||||||||||| ||||| |||  |||||||||||||||    
T  38433096 ttatggtttacaattttgatcacactcatcggaaaacttgtacat 38433140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 66 - 163
Target Start/End: Original strand, 21535330 - 21535428
Alignment:
Q  66 aaataccaagaggtt-gctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    ||||||||||||||| | ||| |||||||||||||||| ||| ||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||    
T  21535330 aaataccaagaggtttggtatgagctagatcttggtgcattggcaataaaaatatctcacttggcaaggcagcaggatctaactcaaaacaatcctctt 21535428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 28639472 - 28639565
Alignment:
Q  70 accaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||||||||||||| |||||||||||| || ||||||||||||||||| | |||||||| |||||||| |||||||  ||||||||||||||    
T  28639472 accaagaggttgctatgagctagatcttgctgtcttgacaatataaatatgtcagttggcatggcagcataatctaacgtaaaacaatcctctt 28639565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 35989552 - 35989643
Alignment:
Q  72 caagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||||||||| | || ||||||||  || |||| |||||||||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  35989552 caagaggttgctttaagttagatcttactgtcttggcaatataaatatgtcagttggcaaggcatcatgatctaactcaaaacaatcctctt 35989643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 41933047 - 41933088
Alignment:
Q  122 tagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  41933047 tagttggcaaggcaacatgatctaactcaaaacaatcctctt 41933088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 4851848 - 4851752
Alignment:
Q  65 aaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||| |||||||||| ||| || ||||||||| |||||   | | || ||||| | | ||||||||||||||||||||||||||||  |||||||||    
T  4851848 aaaatatcaagaggttgttatgagttagatcttgttgcctg--ccagatgaatatgtcatttggcaaggcagcatgatctaactcaaagaaatcctctt 4851752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 125 - 163
Target Start/End: Original strand, 10222899 - 10222937
Alignment:
Q  125 ttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  10222899 ttggcaaggcagcatgatctaactcaaagaaatcctctt 10222937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 34286750 - 34286686
Alignment:
Q  89 ctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaa 153  Q
    |||||||||| || |||| || || |||||||||||||| ||| ||||| ||||||| |||||||    
T  34286750 ctagatcttgttgtcttgccattaaaaatatcttagttgtcaaagcagcgtgatctagctcaaaa 34286686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 20819141 - 20819049
Alignment:
Q  71 ccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    ||||||||||||||| || |||||||||||||||||   |||||||||||| |||||| ||| || |||||||||||||||||||||||||||    
T  20819141 ccaagaggttgctatgagttagatcttggtgccttggtgatataaatatctcagttggaaagacaacatgatctaactcaaaacaatcctctt 20819049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 19624566 - 19624466
Alignment:
Q  21 gatagatagatagatgcaaagaggttctaactctttatttgtcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatc 120  Q
    ||||||||| ||||| |||||||||| ||||| ||||||||     ||| ||||||||||| |||||||||||||||| ||||||| | |||||||||||    
T  19624566 gatagatagttagatacaaagaggttttaactatttatttg-----aatgccaagaggttgttattagctagatcttgttgccttggcgatataaatatc 19624472  T
Q  121 ttagtt 126  Q
    | ||||    
T  19624471 tcagtt 19624466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 28547438 - 28547349
Alignment:
Q  74 agaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||||||||| |||||||||||  | | ||| | ||| |||||||| || |||||||||| || ||||||||| ||||||||||||||    
T  28547438 agaggttgctatgagctagatcttcatacattggcgatagaaatatctcagctggcaaggcaacaagatctaactaaaaacaatcctctt 28547349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 18570 - 18651
Alignment:
Q  82 ctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||| ||||||||||||||| |||| | ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  18570 ctatgagctagatcttggtgtcttggcgatagaaatatctcagttggcaaggcagcaagatctaactcaaaacaatcctctt 18651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 7689 - 7785
Alignment:
Q  67 aataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    ||||||||||||||||||| ||||||||| |||| |||     |||||||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  7689 aataccaagaggttgctatgagctagatcatggttcctcagggatataaatatctaagttggcaaggtagcaggatctaactcaaaacaatcctctt 7785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 32123968 - 32124058
Alignment:
Q  70 accaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcct 160  Q
    |||||||||||||||  |||||||||||  |||||||   ||||||| |||| |||||||||||||||| |||||||||||||||||||||    
T  32123968 accaagaggttgctaagagctagatcttactgccttggagatataaaaatctcagttggcaaggcagcaagatctaactcaaaacaatcct 32124058  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 11347 - 11446
Alignment:
Q  62 tcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctc 161  Q
    |||||||||||||||||||||||| || ||||||||| || |||  | | || ||||| ||| |||||||||||||| |||||||||||||  |||||||    
T  11347 tcaaaaataccaagaggttgctatgagttagatcttgttgtctt--ccagatgaatatgttatttggcaaggcagcaggatctaactcaaagaaatcctc 11444  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 21268552 - 21268629
Alignment:
Q  78 gttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaaca 155  Q
    |||| ||| ||||||||| || ||||||||||||| |||||||| |||||| ||| ||||| ||||||||||||||||    
T  21268552 gttgatatgagctagatcgtgctgccttgacaatagaaatatctcagttggtaagacagcaggatctaactcaaaaca 21268629  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 18500947 - 18500854
Alignment:
Q  70 accaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    ||||||| ||| |||| |||||||||||| ||||||| |||||||  ||| | |||||||||| || |||||||||||||||||||||||||||    
T  18500947 accaagatgtttctatgagctagatcttgatgccttggcaatatacctatgtcagttggcaagacaacatgatctaactcaaaacaatcctctt 18500854  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 67 - 163
Target Start/End: Original strand, 26187751 - 26187848
Alignment:
Q  67 aataccaagaggtt-gctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    |||||||||||||| ||||| || ||||||||  ||||||| | ||| |||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  26187751 aataccaagaggtttgctatgagttagatcttattgccttggcgatagaaatatctcagttggcaaggcagcaggatctaactcaaaacaatcatctt 26187848  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 38257090 - 38257189
Alignment:
Q  62 tcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctc 161  Q
    |||||||||  ||||||||||||| || ||||||||| ||||||  | | || ||||| | | ||||||||||||||||||||||||||||  |||||||    
T  38257090 tcaaaaatattaagaggttgctatgagttagatcttgttgcctt--ccagatgaatatgtcatttggcaaggcagcatgatctaactcaaagaaatcctc 38257187  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 38264665 - 38264764
Alignment:
Q  62 tcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctc 161  Q
    |||||||||  ||||||||||||| || ||||||||| ||||||  | | || ||||| | | ||||||||||||||||||||||||||||  |||||||    
T  38264665 tcaaaaatattaagaggttgctatgagttagatcttgctgcctt--ccagatgaatatgtcatttggcaaggcagcatgatctaactcaaagaaatcctc 38264762  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 18043563 - 18043494
Alignment:
Q  87 agctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaa 156  Q
    |||||||||||| |||||||||||||||||||| | |||||||||||||  | ||||| ||| |||||||    
T  18043563 agctagatcttgttgccttgacaatataaatatgtcagttggcaaggcaaaaagatcttactaaaaacaa 18043494  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 1377966 - 1377871
Alignment:
Q  67 aataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctct 162  Q
    ||||||||||||||||||| ||||||||  |  |||||   | |||||||||||| | |||| ||||||||  ||||||||||||||| |||||||    
T  1377966 aataccaagaggttgctatgagctagattgttctgcctatgcgatataaatatctcaattggaaaggcagccggatctaactcaaaactatcctct 1377871  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 35584683 - 35584782
Alignment:
Q  62 tcaaaaataccaagaggttgctattagctagatcttggtgccttgacaatataaatatcttagttggcaaggcagcatgatctaactcaaaacaatcctc 161  Q
    ||||||||| |||||||||||||| || ||||||||| |||||   |   || ||||| | | ||||||||||||||||||||||||||||  |||||||    
T  35584683 tcaaaaatatcaagaggttgctatgagttagatcttgctgcctg--ccggatgaatatgtcatttggcaaggcagcatgatctaactcaaagaaatcctc 35584780  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 6056165 - 6056209
Alignment:
Q  70 accaagaggttgctattagctagatcttggtgccttgacaatata 114  Q
    |||||||||||||||| |||||||||||| ||| |||||||||||    
T  6056165 accaagaggttgctatgagctagatcttgttgctttgacaatata 6056209  T

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Target: scaffold0048 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 163
Target Start/End: Complemental strand, 52372 - 52337
Alignment:
Q  128 gcaaggcagcatgatctaactcaaaacaatcctctt 163  Q
    ||||||||||||||||||||||||||||||||||||    
T  52372 gcaaggcagcatgatctaactcaaaacaatcctctt 52337  T

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