View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_10 (Length: 543)
Name: NF0939_low_10
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 30 - 493
Target Start/End: Complemental strand, 33711232 - 33710762
Alignment:
| Q |
30 |
tgtcacaaaccaaggaattttcacccaagaagtcttgtaacatgcaaaggctttagacttaatggtttctcatagtttgatcattaggtttgagtttaaa |
129 |
Q |
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| T |
33711232 |
tgtcacaaaccaaggaattttcatccaagaagtcttgcaacatgcaaaggctttagacttaatggtttctcatagtttgatcattaggtttgagtttaaa |
33711133 |
T |
|
| Q |
130 |
aaatataattttcagttgaattggattttcggttggtgcaagtt------nnnnnnnnnnnngaagaagaagaagggggttggtgaatggtaatgaacag |
223 |
Q |
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| T |
33711132 |
aaatataattttcagttgaattggattttcggttggtgcaagttaaaaaaaaaaaaaaaaaagaagaagaagaagggggttggtgaatggtaatgaacag |
33711033 |
T |
|
| Q |
224 |
atggcaacaatttcaccttctttggatatgttgtaaatggcatttgtgaggaatatgtatataacgttctacattttagctattgtttgtagttcac-nn |
322 |
Q |
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||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
33711032 |
atgacaacaatgtcttcttctgtggatatgttgtaaatggcatttgtgaggaatatgtgtataacgttctacattttatctattgtttgtagttcacttt |
33710933 |
T |
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| Q |
323 |
nnnnnngttaagttgttcggtaactagaatttcattgtcttaaagtgaatcaataacttgtccgttgtatataaaatacaatgttcatataaactgactt |
422 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||| |
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| T |
33710932 |
ttttttgttaagttgttcggtaactagaattatattgtcttaaagtgaatcaataacttatccgttgtatataaaatataatgtccatataaaccgactt |
33710833 |
T |
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| Q |
423 |
aagctcacggaacaatttgtgattcatttttattcaagagtttatttatttaagttcttgttgtactcttc |
493 |
Q |
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|| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33710832 |
aaattcacgggataatttgtggttcatttttattcaagagtttatttatttaagttcttgttgtactcttc |
33710762 |
T |
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