View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_11 (Length: 535)
Name: NF0939_low_11
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 9 - 506
Target Start/End: Complemental strand, 12836665 - 12836168
Alignment:
| Q |
9 |
caacaatatcgatttgttaaaattctgtggcgcctctatagccgctatttgacaacaccagttatgagtgatgtttatcataattttgttgtggttgaat |
108 |
Q |
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| T |
12836665 |
caacaatatcgatttgttaaaattctgtggcgcctctatagccgctatttgacaacactggttatgagtgatgtttatcataattttgttgtggttgaat |
12836566 |
T |
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| Q |
109 |
annnnnnncatttggaaggcttgtgttcgagtagttgactgaaaattgatgaccctttaaattgatgattaggataaatggggaggatcaaacctcaagc |
208 |
Q |
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| T |
12836565 |
atttttttcatttggaaggcttgtgttcgagtagttgactgaaaattgatgaccctttaaattgatgattaggataaatggggaggatcaaacctcaagc |
12836466 |
T |
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| Q |
209 |
tctgctgcaacaaagcaaaaggaagaagggcccttatcacatgagtccaataaatattgtattttacacattgactcttgtcatatttgtgttttttctc |
308 |
Q |
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| T |
12836465 |
tctgctgcaacaaagcaaaaggaagaagggccgttatcacatgagtccaataaatattgtattttacacattgactcttgtcatatttgtgttttttctc |
12836366 |
T |
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| Q |
309 |
tttgctacattcaaatattggtctaataggtcagtaaattgaatgtgaaagctgattcatagtgataaatgatatgatatatgcaatacattctttgttt |
408 |
Q |
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| T |
12836365 |
tttgctacattcaaatattggtctaataggtcagtaaattgaatgtgaaagctgattcatagtgataaatgatatgatatatgcaatacattctttgttt |
12836266 |
T |
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| Q |
409 |
cctattttctcattgaatgaattcagaagtgcatcatctgtaatctaataatttataatcttttctgcattcaggacaagatttcaaccagagaacca |
506 |
Q |
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| T |
12836265 |
cctattttctcatagaatgaattcagaagtgcatcatctgtaatctaataatttataattttttctgcattcaggacaagatttcaaccagagaacca |
12836168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 42249470 - 42249540
Alignment:
| Q |
173 |
atgattaggataaatggggaggatcaaacctcaagctctgctgcaacaaagcaaaaggaagaagggccctt |
243 |
Q |
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||||||||| ||||||| |||||||||||||| |||||| | |||||||| |||||||||||||| |||| |
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| T |
42249470 |
atgattaggttaaatggctaggatcaaacctcaggctctgttacaacaaagtaaaaggaagaagggacctt |
42249540 |
T |
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