View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_12 (Length: 534)
Name: NF0939_low_12
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 61 - 524
Target Start/End: Original strand, 3030354 - 3030822
Alignment:
| Q |
61 |
ttcatagcacaccaaattccttaagttgttgaatgacattccaataataaacctttcaaactctttttgttttcgaattggccnnnnnnn-tttctagtt |
159 |
Q |
| |
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|||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3030354 |
ttcatagcacaccaaattccttaaatagttgagtgacattccaataataaacctttcaaactctttttgttttcgaattggccaaaaaaaatttctagtt |
3030453 |
T |
|
| Q |
160 |
gcatggaaatccgcaccaacaagtactgtaattactccaaaccactttagagctgtcttcatccttgtttatgtatcagagctgtcttcatcatcatcaa |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3030454 |
gcatggaaatccgcaccaacaagtactgtaattactccaaaccactttagagctgtcttcatccttgtttatgtatcagagctgtcttcat---catcaa |
3030550 |
T |
|
| Q |
260 |
tttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaatttaaaacatcaagt |
359 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3030551 |
tttgataattgaaaggaagaggtaccgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaatttaaaacatcaagt |
3030650 |
T |
|
| Q |
360 |
tttgccactaactgaagt-------aactataacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttttcaaggaaac |
452 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3030651 |
tttgccactaactgaagtaactaaaaactataacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttttcaaggaaac |
3030750 |
T |
|
| Q |
453 |
agataaaattaacacaaaaacacaaatgattgatcgaaaatatattcataagggaattaccagaaacctatg |
524 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3030751 |
agataaaattaacacaaaaacacaaatgattgatcgaaattatattcataagggaattaccagaaacctatg |
3030822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 224 - 354
Target Start/End: Original strand, 3014814 - 3014944
Alignment:
| Q |
224 |
ttgtttatgtatcagagctgtcttcatcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatg |
323 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3014814 |
ttgtctatgtatctgagctgtcttcatcatcatcaacttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatg |
3014913 |
T |
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| Q |
324 |
ttcattctccaacctgttcaatttaaaacat |
354 |
Q |
| |
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|||||||||||||||||||| | ||||||| |
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| T |
3014914 |
ctcattctccaacctgttcaactcaaaacat |
3014944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 224 - 344
Target Start/End: Original strand, 2996219 - 2996339
Alignment:
| Q |
224 |
ttgtttatgtatcagagctgtcttcatcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatg |
323 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
2996219 |
ttgtctatgtatctgagctgtcttcatcatcatcaacttgataattgaaaggaagaggtactgacttaaatgccctatagtttccaacattgttgaaatg |
2996318 |
T |
|
| Q |
324 |
ttcattctccaacctgttcaa |
344 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2996319 |
ctcattctccaacctgttcaa |
2996339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 223 - 360
Target Start/End: Original strand, 11327157 - 11327294
Alignment:
| Q |
223 |
cttgtttatgtatcagagctgtcttcatcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaat |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11327157 |
cttgtttatgtatcagagctgtcttcatcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaat |
11327256 |
T |
|
| Q |
323 |
gttcattctccaacctgttcaatttaaaacatcaagtt |
360 |
Q |
| |
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| |||||||||||||||||||| | ||||||||||||| |
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| T |
11327257 |
gctcattctccaacctgttcaagtcaaaacatcaagtt |
11327294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 11327702 - 11327861
Alignment:
| Q |
360 |
tttgccactaactgaagtaacta----taacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttttcaaggaaacaga |
455 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| |||| || |
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| T |
11327702 |
tttgccactaactgatgtaactaaatataacaaactgtaacagaatactacagcagtttgatattgctagaattggaattttagttttcaagaaaactga |
11327801 |
T |
|
| Q |
456 |
taaaattaacacaaaaacacaaatgattgatcgaaaatatattcataagggaattaccagaaacctat |
523 |
Q |
| |
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||||||||||||||| | ||||||| | |||||||||||||| | |||||||||||||||| |
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|
| T |
11327802 |
taaaattaacacaaaca--------attgatcaagaatatattcataagcggattaccagaaacctat |
11327861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 223 - 360
Target Start/End: Complemental strand, 20064257 - 20064120
Alignment:
| Q |
223 |
cttgtttatgtatcagagctgtcttcatcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaat |
322 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20064257 |
cttgtttatgtatcagagctgtcttcatcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaat |
20064158 |
T |
|
| Q |
323 |
gttcattctccaacctgttcaatttaaaacatcaagtt |
360 |
Q |
| |
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| |||||||||||||||||||| | ||||||||||||| |
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|
| T |
20064157 |
gctcattctccaacctgttcaagtcaaaacatcaagtt |
20064120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 20063712 - 20063553
Alignment:
| Q |
360 |
tttgccactaactgaagtaacta----taacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttttcaaggaaacaga |
455 |
Q |
| |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| |||| || |
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| T |
20063712 |
tttgccactaactgatgtaactaaatataacaaactgtaacagaatactacagcagtttgatattgctagaattggaattttagttttcaagaaaactga |
20063613 |
T |
|
| Q |
456 |
taaaattaacacaaaaacacaaatgattgatcgaaaatatattcataagggaattaccagaaacctat |
523 |
Q |
| |
|
||||||||||||||| | ||||||| | |||||||||||||| | |||||||||||||||| |
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|
| T |
20063612 |
taaaattaacacaaaca--------attgatcaagaatatattcataagcggattaccagaaacctat |
20063553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 18545941 - 18545872
Alignment:
| Q |
269 |
tgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacct |
338 |
Q |
| |
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|||||||| |||| |||||||||||||| | |||||||||||||||||||| || |||||||||||||| |
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| T |
18545941 |
tgaaaggatgagggactgacttgaatgcacggtagtttccaacattgttcaagtgctcattctccaacct |
18545872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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