View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0939_low_14 (Length: 483)

Name: NF0939_low_14
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0939_low_14
NF0939_low_14
[»] chr5 (3 HSPs)
chr5 (304-465)||(38558947-38559110)
chr5 (308-348)||(6695792-6695832)
chr5 (304-348)||(6697372-6697416)
[»] chr8 (4 HSPs)
chr8 (304-473)||(40600534-40600704)
chr8 (304-345)||(14706279-14706320)
chr8 (317-366)||(16910287-16910336)
chr8 (310-366)||(27244277-27244333)
[»] chr3 (13 HSPs)
chr3 (304-441)||(53343106-53343244)
chr3 (59-255)||(24733881-24734080)
chr3 (304-440)||(52717623-52717760)
chr3 (33-116)||(24677081-24677164)
chr3 (304-440)||(32558219-32558357)
chr3 (31-116)||(24634451-24634536)
chr3 (367-437)||(7050462-7050533)
chr3 (304-348)||(45781551-45781595)
chr3 (304-347)||(7050983-7051026)
chr3 (39-116)||(24656563-24656640)
chr3 (39-103)||(24672936-24673000)
chr3 (304-348)||(25694865-25694909)
chr3 (304-348)||(52717123-52717167)
[»] chr1 (2 HSPs)
chr1 (304-440)||(8641811-8641948)
chr1 (304-398)||(45500661-45500758)
[»] chr4 (1 HSPs)
chr4 (305-394)||(21838206-21838295)
[»] chr7 (1 HSPs)
chr7 (304-396)||(22297851-22297943)
[»] chr6 (1 HSPs)
chr6 (309-359)||(14050191-14050241)
[»] chr2 (4 HSPs)
chr2 (304-348)||(1522396-1522440)
chr2 (310-398)||(10174650-10174738)
chr2 (304-348)||(1521650-1521694)
chr2 (310-398)||(6850289-6850377)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 304 - 465
Target Start/End: Original strand, 38558947 - 38559110
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagagac-aaa 402  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38558947 gtggattctaggatgaaccattaaataagtggttcatcggtggaccacctttatacaccatcagatttaaattaaaggtttagatgtgttagagacaaaa 38559046  T
Q  403 gtgagaacac-aagtatatttttgcacactatccttgttatcagcctcatctttctcacgtttg 465  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38559047 gtgagaacacaaagtatatttttgcacactatccttgttgtcagcctcatctttctcacgtttg 38559110  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 6695792 - 6695832
Alignment:
Q  308 attctaggatgaaccatcaaataaatggttcatcggtggac 348  Q
    |||||||| ||||||||||||||| ||||||| ||||||||    
T  6695792 attctagggtgaaccatcaaataagtggttcaccggtggac 6695832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 6697416 - 6697372
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 348  Q
    |||||||||||| ||||||||||||||| ||||||| ||| ||||    
T  6697416 gtggattctagggtgaaccatcaaataagtggttcaccggcggac 6697372  T

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Target: chr8 (Bit Score: 131; Significance: 9e-68; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 304 - 473
Target Start/End: Complemental strand, 40600704 - 40600534
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagagac-aaa 402  Q
    ||||||| |||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||| |||    
T  40600704 gtggattttaggatgaaccatcaaataagtggttcatcggtggaccatctttatacaccatcaaatttaaattaaaggtttagacgtgttagagacaaaa 40600605  T
Q  403 gtgagaacacaagtatatttttgcacactatccttgttatcagcctcatctttctcacgtttgactctgtg 473  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40600604 gtgagaacacaaatatatttttgcacaatatccttgttatcagcctcatctttctcacgtttgactctgtg 40600534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 345
Target Start/End: Original strand, 14706279 - 14706320
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtg 345  Q
    |||||||||||| |||||||||||| |||| |||||||||||    
T  14706279 gtggattctagggtgaaccatcaaacaaatagttcatcggtg 14706320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 16910287 - 16910336
Alignment:
Q  317 tgaaccatcaaataaatggttcatcggtggactacctttatacaccatca 366  Q
    ||||||||||| ||| |||||||||||||||| |||||| || |||||||    
T  16910287 tgaaccatcaactaagtggttcatcggtggaccacctttgtataccatca 16910336  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 27244333 - 27244277
Alignment:
Q  310 tctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatca 366  Q
    |||||| ||||||||||| ||||| ||||| |||||||| || |||||| |||||||    
T  27244333 tctagggtgaaccatcaattaaatagttcaccggtggaccacttttatataccatca 27244277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 304 - 441
Target Start/End: Original strand, 53343106 - 53343244
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagagac-aaa 402  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  53343106 gtggattctaggatgaaccatcaaataagtggttcatcggtggaccacctttatacaccatcagatttaaattaaaggtttaaatgtgttagagacaaaa 53343205  T
Q  403 gtgagaacacaagtatatttttgcacactatccttgtta 441  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53343206 gtgagaacacaagtatatttttgcacactatccttgtta 53343244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 59 - 255
Target Start/End: Original strand, 24733881 - 24734080
Alignment:
Q  59 cgaagccaattccatgctcatcagaattgtataagctttatgcatactcattttgtgtttcccttgatcctgtgattggagaatgagttttgnnnnnnnn 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  24733881 cgaagccaattccatgctcatcagaattgtataagctttatgcatactcattttgtgtttcccttgatcctgtgattggagaatgagttttgaaaaaaaa 24733980  T
Q  159 nnt-aaaga-gttgtccataaatag-annnnnnnnnnctgatggaaaatatgtgacgtaggaagtgttgtgaaactttcgaacaaaactgtgatgcttta 255  Q
      | ||||| |||||||||||||||            ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  24733981 aataaaagaggttgtccataaatagttttttttttttctgatggaaaatatgtgacgtagaaagtgttgtccaactttcgaacaaaactgtgatgcttta 24734080  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 304 - 440
Target Start/End: Complemental strand, 52717760 - 52717623
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttaga-gacaaa 402  Q
    |||||||||||| ||||||||||| |||||||||||| | ||||| || ||| ||||||||  ||||||||||||||||||||||||||||||  | |||    
T  52717760 gtggattctagggtgaaccatcaactaaatggttcatggatggaccacttttgtacaccattcgatttaaattaaaggtttagatgtgttagacaaaaaa 52717661  T
Q  403 gtgagaacacaagtatatttttgcacactatccttgtt 440  Q
     |||||||||||||||| || |||||||||||||||||    
T  52717660 atgagaacacaagtatacttctgcacactatccttgtt 52717623  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 24677081 - 24677164
Alignment:
Q  33 tttgatccttgatacttaattccaatcgaagccaattccatgctcatcagaattgtataagctttatgcatactcattttgtgt 116  Q
    ||||| |||||| ||||||| ||||| |||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  24677081 tttgaaccttgacacttaataccaatggaagccaactccaagctgatcagaatagtataagctttatgcatactcattttgtgt 24677164  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 440
Target Start/End: Original strand, 32558219 - 32558357
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttag--agacaa 401  Q
    |||||||||||| ||||||||||| ||| ||||||| ||  |||  || ||| ||||||||  |||||||||||||||||||||| ||||||  | | ||    
T  32558219 gtggattctagggtgaaccatcaactaagtggttcaccgacggatcacttttgtacaccattcgatttaaattaaaggtttagatatgttagacaaaaaa 32558318  T
Q  402 agtgagaacacaagtatatttttgcacactatccttgtt 440  Q
    | |||||||| ||||||| || |||||||||||||||||    
T  32558319 aatgagaacataagtatacttctgcacactatccttgtt 32558357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 24634451 - 24634536
Alignment:
Q  31 tatttgatccttgatacttaattccaatcgaagccaattccatgctcatcagaattgtataagctttatgcatactcattttgtgt 116  Q
    ||||||| ||||||||| |||||||||| ||| |||| ||||  ||||||||||| ||||| |||||||| |||||||||||||||    
T  24634451 tatttgaaccttgatacataattccaattgaacccaactccaaactcatcagaatagtatatgctttatggatactcattttgtgt 24634536  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 367 - 437
Target Start/End: Original strand, 7050462 - 7050533
Alignment:
Q  367 gatttaaattaaaggtttagatgtgttaga-gacaaagtgagaacacaagtatatttttgcacactatcctt 437  Q
    ||||||||||||||||||||||||||||||  | ||| |||||||||||||||| || ||||||||||||||    
T  7050462 gatttaaattaaaggtttagatgtgttagacaaaaaaatgagaacacaagtatacttctgcacactatcctt 7050533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 45781551 - 45781595
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 348  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||    
T  45781551 gtggattctagggtgaaccatcaaacaaatggttcaccggtggac 45781595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 347
Target Start/End: Complemental strand, 7051026 - 7050983
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtgga 347  Q
    |||||||||||| ||||||||||||||| || ||||||||||||    
T  7051026 gtggattctagggtgaaccatcaaataagtgattcatcggtgga 7050983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 24656563 - 24656640
Alignment:
Q  39 ccttgatacttaattccaatcgaagccaattccatgctcatcagaattgtataagctttatgcatactcattttgtgt 116  Q
    ||||| ||||| | |||||| ||| |||| || | | |||| ||||| ||||| ||||||||||||||||||||||||    
T  24656563 ccttggtactttactccaattgaacccaactctaaggtcataagaatagtatatgctttatgcatactcattttgtgt 24656640  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 24672936 - 24673000
Alignment:
Q  39 ccttgatacttaattccaatcgaagccaattccatgctcatcagaattgtataagctttatgcat 103  Q
    |||||||||||||||||||| ||||| || || | | |||| ||||| ||||| |||||||||||    
T  24672936 ccttgatacttaattccaattgaagctaactctaaggtcataagaatagtatatgctttatgcat 24673000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 25694909 - 25694865
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 348  Q
    |||||||||||  |||||||||| |||| ||||||||||||||||    
T  25694909 gtggattctagagtgaaccatcatataagtggttcatcggtggac 25694865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 52717123 - 52717167
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 348  Q
    |||||||||||| ||||||||||||||| || |||| ||||||||    
T  52717123 gtggattctagggtgaaccatcaaataactgattcaccggtggac 52717167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 304 - 440
Target Start/End: Complemental strand, 8641948 - 8641811
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttaga-gacaaa 402  Q
    |||||||||||| ||||||||||| ||| |||||   || ||||| || ||| ||||||||  ||||||||||||||||||||||||||||||  | |||    
T  8641948 gtggattctagggtgaaccatcaactaagtggttttccgatggaccacttttgtacaccatttgatttaaattaaaggtttagatgtgttagacaaaaaa 8641849  T
Q  403 gtgagaacacaagtatatttttgcacactatccttgtt 440  Q
     |||||||||||||||| ||  | ||||||||||||||    
T  8641848 atgagaacacaagtatacttcaggacactatccttgtt 8641811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 398
Target Start/End: Complemental strand, 45500758 - 45500661
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtg---gactacctttatacaccatcagatttaaattaaaggtttagatgtgttagaga 398  Q
    ||||||| |||| ||||||||||||||| |||||||  | ||   ||| || |||||||| |||| ||||||||||||| ||||| ||||||||||||    
T  45500758 gtggattttaggttgaaccatcaaataagtggttcactgatgatggaccacttttatacatcatccgatttaaattaaaagtttaaatgtgttagaga 45500661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 394
Target Start/End: Complemental strand, 21838295 - 21838206
Alignment:
Q  305 tggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatc-agatttaaattaaaggtttagatgtgtta 394  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| || |||||| |||||| |||| | | ||||||||||||||| ||||    
T  21838295 tggattctaggatgaaccatcaattaagtggttcatcggtggaccacttttatataccatcaagatat-atttaaaggtttagatgagtta 21838206  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 396
Target Start/End: Complemental strand, 22297943 - 22297851
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatc-agatttaaattaaaggtttagatgtgttaga 396  Q
    |||||||||||  ||||||||||| ||| |||||||||||||||| || |||||| |||||| |||| | | ||||||||||||||| ||||||    
T  22297943 gtggattctagagtgaaccatcaattaagtggttcatcggtggaccacttttatataccatcaagatat-atttaaaggtttagatgagttaga 22297851  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 14050191 - 14050241
Alignment:
Q  309 ttctaggatgaaccatcaaataaatggttcatcggtggactacctttatac 359  Q
    |||||||||||||||||||| || ||||||||||||| ||||| |||||||    
T  14050191 ttctaggatgaaccatcaaacaagtggttcatcggtgaactacttttatac 14050241  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 1522440 - 1522396
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 348  Q
    ||||||||||||||||||||||||| || ||||||| ||||||||    
T  1522440 gtggattctaggatgaaccatcaaacaagtggttcaccggtggac 1522396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 398
Target Start/End: Complemental strand, 10174738 - 10174650
Alignment:
Q  310 tctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagaga 398  Q
    |||||| ||||||||||| ||||||||||| |||||||| || |||||  ||| ||||||| |  | |||||||| |||| ||||||||    
T  10174738 tctagggtgaaccatcaactaaatggttcaccggtggaccacttttatttaccgtcagattaatttaaaaggtttggatgagttagaga 10174650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 1521650 - 1521694
Alignment:
Q  304 gtggattctaggatgaaccatcaaataaatggttcatcggtggac 348  Q
    |||||||||||| |||||||||||| || ||||||| ||||||||    
T  1521650 gtggattctagggtgaaccatcaaacaagtggttcaccggtggac 1521694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 398
Target Start/End: Original strand, 6850289 - 6850377
Alignment:
Q  310 tctaggatgaaccatcaaataaatggttcatcggtggactacctttatacaccatcagatttaaattaaaggtttagatgtgttagaga 398  Q
    |||||| |||| ||| |||||| |||||||||||||||| || |||||  ||| ||||||| |  | |||||||| |||| ||||||||    
T  6850289 tctagggtgaagcataaaataagtggttcatcggtggaccacttttatttaccgtcagattaatttaaaaggtttggatgagttagaga 6850377  T

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