View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_15 (Length: 468)
Name: NF0939_low_15
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 3759240 - 3759383
Alignment:
| Q |
17 |
cctgtgtatggaactactcgtgttagttaattagttaattattgattagtactaatagtgtcattgttaatgcatgaggctagaagcatatatcatatat |
116 |
Q |
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| T |
3759240 |
cctgtgtatggaactacccgtgttagttaattagttaattattgattagtaataatagtgtcattgttaatgcatgaggctagaagcatatatcatatat |
3759339 |
T |
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| Q |
117 |
agatacatgaataacagaaccatttggatatttgtttttctaag |
160 |
Q |
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| T |
3759340 |
agatacatgaataacagaaccatttggatatttgtctttctaag |
3759383 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 171 - 362
Target Start/End: Original strand, 3759486 - 3759665
Alignment:
| Q |
171 |
ttgtaagtgtgatgtgaacaaaaagaacaaaaatagagtaatgcttaacctcaagaattgttgtatcgcgagatgttcacgagagacaagc---gtcatt |
267 |
Q |
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| T |
3759486 |
ttgtaagtgcgatgtgaacaaaaagaacaaaaatagagtaatgc---------------gttgtattgcgagatgttcaggagagataagacgtgtcatt |
3759570 |
T |
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| Q |
268 |
tattttgaccacaacaaatcctttattccaccaaatctcgaattgacaccctttcaaacattcaacatgtccgtattcgtgagtttttgggacgt |
362 |
Q |
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| T |
3759571 |
tattttgaccccaacaaataatttattccaccaaatctggaattgacactctttctaacattaaacatatctgttttcgtgagtttttgggacgt |
3759665 |
T |
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