View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_16 (Length: 460)
Name: NF0939_low_16
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_16 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 96 - 329
Target Start/End: Original strand, 10016984 - 10017217
Alignment:
| Q |
96 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
195 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10016984 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
10017083 |
T |
|
| Q |
196 |
gtgttaatttttatcattcttggcataaaatcggtcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
295 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10017084 |
gtgttcatttttatcattcttggcataaaatcgatcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
10017183 |
T |
|
| Q |
296 |
tcgaaaaagcatgaatcaccaacccgcggttcat |
329 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
10017184 |
ccgaaaaagcatgaatcaccaacccgcggttcat |
10017217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 96 - 329
Target Start/End: Original strand, 13855255 - 13855488
Alignment:
| Q |
96 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
195 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13855255 |
aaattaatgccttggaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
13855354 |
T |
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| Q |
196 |
gtgttaatttttatcattcttggcataaaatcggtcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13855355 |
gtgttaatttttatcattcttggcataaaatcggtcagttgctgggtaccgatggattggtttttgcaatccgaatccgaccgttcataactgtataaaa |
13855454 |
T |
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| Q |
296 |
tcgaaaaagcatgaatcaccaacccgcggttcat |
329 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
13855455 |
ccgaaaaagcatgaatcaccaacccgcggttcat |
13855488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 96 - 329
Target Start/End: Original strand, 8362 - 8595
Alignment:
| Q |
96 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
195 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8362 |
aaattaattccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
8461 |
T |
|
| Q |
196 |
gtgttaatttttatcattcttggcataaaatcggtcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
295 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8462 |
gtgttcatttttatcattcttggcataaaatcgttcggttgttgggttccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
8561 |
T |
|
| Q |
296 |
tcgaaaaagcatgaatcaccaacccgcggttcat |
329 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
8562 |
ctgaaaaagcatgaatcaccaacccgcggttcat |
8595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 96 - 329
Target Start/End: Complemental strand, 26414769 - 26414536
Alignment:
| Q |
96 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26414769 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
26414670 |
T |
|
| Q |
196 |
gtgttaatttttatcattcttggcataaaatcggtcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26414669 |
gtgttaatttttatcattcttggcataaaatcggtcggttgctgggtacagatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
26414570 |
T |
|
| Q |
296 |
tcgaaaaagcatgaatcaccaacccgcggttcat |
329 |
Q |
| |
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| ||||||||||||||||||||| || |||||| |
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| T |
26414569 |
ccaaaaaagcatgaatcaccaacctgcagttcat |
26414536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 96 - 329
Target Start/End: Complemental strand, 7692552 - 7692340
Alignment:
| Q |
96 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaaaa |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7692552 |
aaattaatgccttgaaattgaatagtttttgagagttccaagacaattgagagagagacaacacgtcttccct---------------------gtaaaa |
7692474 |
T |
|
| Q |
196 |
gtgttaatttttatcattcttggcataaaatcggtcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaa |
295 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7692473 |
gtgttaatttttatcattcttggcataaaatcggtcggttgctgggtaccgatggattgatttttgctatccgaatccgaccgttcataactgtataaaa |
7692374 |
T |
|
| Q |
296 |
tcgaaaaagcatgaatcaccaacccgcggttcat |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
7692373 |
ccgaaaaagcatgaatcaccaacccgcggttcat |
7692340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 10474179 - 10474061
Alignment:
| Q |
100 |
taatgccttgaaattgaatagtttttg------agagttccaagacaattgagagagagacaacacgtcttccctatgcaagccagctttcacattgtaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| || |||| |
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|
| T |
10474179 |
taatgccttgaaattgaatagtttttactttttagagttccaagaaaattgagcgagagacaacaggtcttccctatgcaagccagctttcatatagtaa |
10474080 |
T |
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| Q |
194 |
aagtgttaatttttatcat |
212 |
Q |
| |
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||||||||||||||||||| |
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| T |
10474079 |
aagtgttaatttttatcat |
10474061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 5975830 - 5975774
Alignment:
| Q |
108 |
tgaaattgaatagtttttgagagttccaagacaattgagaga-gagacaacacgtct |
163 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| |
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| T |
5975830 |
tgaaattgaatagtttttgtgagttccaagacaattgacagatgagacaacacgtct |
5975774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 321
Target Start/End: Complemental strand, 5975529 - 5975427
Alignment:
| Q |
218 |
gcataaaatcggtcggttgttgggtaccgatggattgatttttgcaatccgaatccgaccgttcataactgtataaaatcgaaaaagcatgaatcaccaa |
317 |
Q |
| |
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||||| || ||||||| | ||||||||||| ||||| ||||| ||||||||||||||||||| ||| ||||||| ||||||| | |||| |||||| |
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| T |
5975529 |
gcatacaaacggtcggctattgggtaccgacggattcgtttttccaatccgaatccgaccgttgtaaaccatataaaaccgaaaaa-cctgaagcaccaa |
5975431 |
T |
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| Q |
318 |
cccg |
321 |
Q |
| |
|
|||| |
|
|
| T |
5975430 |
cccg |
5975427 |
T |
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Back To:
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