View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_19 (Length: 425)
Name: NF0939_low_19
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 71 - 329
Target Start/End: Original strand, 48121158 - 48121416
Alignment:
| Q |
71 |
ctaccacctataaataaatttttcactgttagtccaaaaaatgcagtgtaaacattactcctccgagctcaaatataagaaaataaaagtttatgtgttt |
170 |
Q |
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| T |
48121158 |
ctaccacctataaataaatttttcactgttagtccaaaaaatgcagtgtaaacattactcctccgagctcaaatataagaaaataaaagtttatgtgttt |
48121257 |
T |
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| Q |
171 |
ggtataaacttggattagttgtatatagacnnnnnnngtttatatttgagaccataaggagtatgtggtaacattattactattcagggttcagttcagg |
270 |
Q |
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| T |
48121258 |
ggtataaacttggattagttgtatatagactttttttgtttatatttgagaccataaggagtatgtggtaacattattactgttcagggttcagttcagg |
48121357 |
T |
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| Q |
271 |
aagaaaaatcaaaccgaactaaaccgctaaaggtaaaattgaaccaaaccgttaattgt |
329 |
Q |
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| T |
48121358 |
aagaaaaatcaaaccaaactaaaccgctaaaggtaaaattgaaccagaccgttaattgt |
48121416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 48121405 - 48121454
Alignment:
| Q |
338 |
accgttaattgttgtcccgaaccagtatgaaggtttgttcacaggttctg |
387 |
Q |
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| T |
48121405 |
accgttaattgttgtcccgaaccagtatgaaggtttgttcactggttctg |
48121454 |
T |
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