View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0939_low_2 (Length: 759)

Name: NF0939_low_2
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0939_low_2
NF0939_low_2
[»] chr4 (12 HSPs)
chr4 (263-449)||(4089801-4089993)
chr4 (152-215)||(44362664-44362727)
chr4 (153-208)||(37496703-37496758)
chr4 (160-205)||(13307883-13307928)
chr4 (149-206)||(18513248-18513305)
chr4 (465-509)||(4089677-4089721)
chr4 (147-198)||(34589721-34589772)
chr4 (154-208)||(13117429-13117483)
chr4 (154-208)||(14465299-14465353)
chr4 (153-195)||(28663491-28663533)
chr4 (172-206)||(45615422-45615456)
chr4 (170-207)||(683068-683105)
[»] scaffold0314 (1 HSPs)
scaffold0314 (159-213)||(8953-9007)
[»] chr6 (8 HSPs)
chr6 (153-205)||(10031569-10031621)
chr6 (153-208)||(19369816-19369871)
chr6 (159-208)||(6751887-6751936)
chr6 (170-208)||(10158000-10158038)
chr6 (154-207)||(5579654-5579707)
chr6 (658-704)||(882743-882789)
chr6 (147-200)||(1334654-1334707)
chr6 (159-196)||(29959180-29959217)
[»] chr1 (4 HSPs)
chr1 (154-208)||(14332409-14332462)
chr1 (155-206)||(40176604-40176655)
chr1 (660-703)||(1514401-1514444)
chr1 (672-706)||(27500340-27500374)
[»] chr2 (8 HSPs)
chr2 (155-208)||(43586010-43586063)
chr2 (154-206)||(18512149-18512201)
chr2 (153-208)||(45000851-45000905)
chr2 (158-207)||(13501084-13501133)
chr2 (147-204)||(39399905-39399962)
chr2 (155-206)||(18570973-18571024)
chr2 (157-208)||(33884054-33884105)
chr2 (155-208)||(14373432-14373485)
[»] chr7 (11 HSPs)
chr7 (155-206)||(5937428-5937479)
chr7 (153-208)||(38134411-38134466)
chr7 (154-208)||(1885573-1885627)
chr7 (147-205)||(35238192-35238250)
chr7 (161-206)||(2144546-2144591)
chr7 (160-205)||(48964070-48964115)
chr7 (164-204)||(2143862-2143902)
chr7 (149-208)||(25956442-25956499)
chr7 (170-205)||(44172898-44172933)
chr7 (155-208)||(22801746-22801799)
chr7 (160-205)||(28635178-28635223)
[»] chr8 (8 HSPs)
chr8 (154-208)||(24295142-24295196)
chr8 (155-205)||(27733848-27733898)
chr8 (154-207)||(26915246-26915299)
chr8 (154-206)||(42874522-42874574)
chr8 (164-207)||(31119097-31119140)
chr8 (154-213)||(31548293-31548352)
chr8 (660-723)||(16972048-16972113)
chr8 (154-207)||(34073984-34074037)
[»] chr5 (7 HSPs)
chr5 (154-200)||(30080514-30080560)
chr5 (156-206)||(38784808-38784858)
chr5 (170-207)||(10009842-10009879)
chr5 (161-208)||(10010561-10010608)
chr5 (153-215)||(19167574-19167637)
chr5 (157-207)||(26205766-26205816)
chr5 (351-440)||(42594443-42594532)
[»] chr3 (5 HSPs)
chr3 (154-208)||(49179720-49179774)
chr3 (159-215)||(14338481-14338537)
chr3 (658-706)||(38332536-38332584)
chr3 (170-220)||(20691335-20691385)
chr3 (170-208)||(44427857-44427895)
[»] scaffold0024 (1 HSPs)
scaffold0024 (154-197)||(18124-18167)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 263 - 449
Target Start/End: Complemental strand, 4089993 - 4089801
Alignment:
Q  263 acacttaataaaccaagaaagcatttatat----gattaaacatccat----gatattgaagagaattat-acctgtgatgatgagtgatgaatttgttg 353  Q
    ||||||||||||||||||||||||||||||    ||| ||||||||||    |||||| ||||||||||| |||| || ||||||||||||||||||       
T  4089993 acacttaataaaccaagaaagcatttatatatttgatcaaacatccatcgatgatattaaagagaattattacctctgctgatgagtgatgaatttg--- 4089897  T
Q  354 accacgaagaacttcacaaacaccgtcaaccccaccaaactcgagaagagatttcaagtccttttccttcacaattcctgcaatatcgttcctaac 449  Q
    |||||| ||||| |||||||| |   |||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||| ||||    
T  4089896 accacggagaacatcacaaactctaccaaccccaccaaactcaagaagagacttcaagtccttctccttcacaattccagcaatatcattcgtaac 4089801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 44362664 - 44362727
Alignment:
Q  152 ctgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcggcgtcaga 215  Q
    ||||||||||||||||| |||||||||||||||||| || ||||||||| |||| || ||||||    
T  44362664 ctgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcaga 44362727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 37496703 - 37496758
Alignment:
Q  153 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    ||||||||||||  || ||||||||||||||||||||| ||||||||| |||||||    
T  37496703 tgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcgg 37496758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 13307883 - 13307928
Alignment:
Q  160 gataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 205  Q
    ||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  13307883 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 13307928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 18513305 - 18513248
Alignment:
Q  149 acactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 206  Q
    |||| ||||||||||| | | ||||||||||||||||||||| ||||||| |||||||    
T  18513305 acacagacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18513248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 509
Target Start/End: Complemental strand, 4089721 - 4089677
Alignment:
Q  465 tgaagccatttcttgttgtacacgctactgctagtagtagtgagt 509  Q
    |||||||||||||||||| |||||||||  |||||||||||||||    
T  4089721 tgaagccatttcttgttgcacacgctacctctagtagtagtgagt 4089677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 34589772 - 34589721
Alignment:
Q  147 acacactgacaccgataaaattgtgagaaaatgacataattcaacgtaatca 198  Q
    ||||| |||||||||||| | | ||||||||||||||||||||| |||||||    
T  34589772 acacattgacaccgataacaatttgagaaaatgacataattcaatgtaatca 34589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 13117429 - 13117483
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    |||||| ||||||||  |||||||||||| ||||||| ||||||||| |||||||    
T  13117429 gacaccaataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcgg 13117483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 14465353 - 14465299
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    ||||||||||| | | |||||||||||||||||||||  |||||| |||||||||    
T  14465353 gacaccgataataatttgagaaaatgacataattcaatttaatcatatgtgtcgg 14465299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 28663491 - 28663533
Alignment:
Q  153 tgacaccgataaaattgtgagaaaatgacataattcaacgtaa 195  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||    
T  28663491 tgacacggataaaattttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 45615456 - 45615422
Alignment:
Q  172 agaaaatgacataattcaacgtaatcacatgtgtc 206  Q
    |||||||||||||||| ||||||||||||||||||    
T  45615456 agaaaatgacataattgaacgtaatcacatgtgtc 45615422  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 683068 - 683105
Alignment:
Q  170 tgagaaaatgacataattcaacgtaatcacatgtgtcg 207  Q
    |||||||||||||||||| || ||||||||||||||||    
T  683068 tgagaaaatgacataattgaatgtaatcacatgtgtcg 683105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 8953 - 9007
Alignment:
Q  159 cgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcggcgtca 213  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  8953 cgataaaattttgagaaaatgacataattcaacgtaatcacaagtgtcggtgtca 9007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 10031569 - 10031621
Alignment:
Q  153 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 205  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  10031569 tgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 19369816 - 19369871
Alignment:
Q  153 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  19369816 tgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcgg 19369871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 6751936 - 6751887
Alignment:
Q  159 cgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    |||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  6751936 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcgg 6751887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 10158000 - 10158038
Alignment:
Q  170 tgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  10158000 tgagaaaatgacataattcaatgtaatcacatgtgtcgg 10158038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 5579654 - 5579707
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 207  Q
    ||||||||||||||| ||||||||||||||| ||||| ||| ||||| ||||||    
T  5579654 gacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 5579707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 658 - 704
Target Start/End: Complemental strand, 882789 - 882743
Alignment:
Q  658 tatgtttgaataccttcatgcaaaaatgagttgaacaataaatttga 704  Q
    |||||||| |||| ||||||||||| |||||| ||||||||||||||    
T  882789 tatgtttggatacattcatgcaaaagtgagttaaacaataaatttga 882743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 1334654 - 1334707
Alignment:
Q  147 acacactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcaca 200  Q
    ||||| |||||| ||||||||| ||| |||| |||||||||||| |||||||||    
T  1334654 acacattgacacggataaaattttgaaaaaaggacataattcaatgtaatcaca 1334707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 29959180 - 29959217
Alignment:
Q  159 cgataaaattgtgagaaaatgacataattcaacgtaat 196  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  29959180 cgataaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 14332409 - 14332462
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||    
T  14332409 gacaccgataaaatt-tgagaaaatgacataattcaatgtaatcacatatgtcgg 14332462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 40176604 - 40176655
Alignment:
Q  155 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 206  Q
    |||||||||||||| |||||||||||| | |||||| |||||||||||||||    
T  40176604 acaccgataaaattttgagaaaatgacttcattcaatgtaatcacatgtgtc 40176655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 703
Target Start/End: Complemental strand, 1514444 - 1514401
Alignment:
Q  660 tgtttgaataccttcatgcaaaaatgagttgaacaataaatttg 703  Q
    |||||| |||| |||||| |||||||||||||||||||||||||    
T  1514444 tgtttggatacattcatgtaaaaatgagttgaacaataaatttg 1514401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 672 - 706
Target Start/End: Complemental strand, 27500374 - 27500340
Alignment:
Q  672 ttcatgcaaaaatgagttgaacaataaatttgagt 706  Q
    |||||| ||||||||||||||||||||||||||||    
T  27500374 ttcatgtaaaaatgagttgaacaataaatttgagt 27500340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 43586063 - 43586010
Alignment:
Q  155 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||    
T  43586063 acacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcgg 43586010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 18512201 - 18512149
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 206  Q
    ||||||||||||||| ||||||||| | ||||||||| |||||||||||||||    
T  18512201 gacaccgataaaattttgagaaaataatataattcaatgtaatcacatgtgtc 18512149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 45000905 - 45000851
Alignment:
Q  153 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||||    
T  45000905 tgacaccgataaaatt-tgagaaaatgacacaattcaatgtaatcatatgtgtcgg 45000851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 13501133 - 13501084
Alignment:
Q  158 ccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 207  Q
    ||||||||||| | ||||||||||||||||||| ||||||||| ||||||    
T  13501133 ccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgtcg 13501084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 39399905 - 39399962
Alignment:
Q  147 acacactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtg 204  Q
    ||||| |||||||||| ||||| | |||||||||||||||||||| || |||||||||    
T  39399905 acacattgacaccgatgaaatttttagaaaatgacataattcaacctattcacatgtg 39399962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 18570973 - 18571024
Alignment:
Q  155 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 206  Q
    |||||||||| | | ||||||||||||||||||||| ||||||| |||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 18571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 33884054 - 33884105
Alignment:
Q  157 accgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    ||||||||||||||||||||||||||| |||||  ||||| ||| |||||||    
T  33884054 accgataaaattgtgagaaaatgacatgattcagtgtaattacaagtgtcgg 33884105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 14373485 - 14373432
Alignment:
Q  155 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    ||||| |||||||| |||   ||||||||||||||| |||||||||||||||||    
T  14373485 acaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcgg 14373432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 5937479 - 5937428
Alignment:
Q  155 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 206  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  5937479 acacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtc 5937428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 38134466 - 38134411
Alignment:
Q  153 tgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    |||||||||||| | | ||||||||||||||||||||| ||||||| |||||||||    
T  38134466 tgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcgg 38134411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 1885573 - 1885627
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    ||||| ||||||||| ||| ||||||||||||||||| ||||||||| |||||||    
T  1885573 gacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcgg 1885627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 35238250 - 35238192
Alignment:
Q  147 acacactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 205  Q
    ||||| |||||||||||| ||| |||||||||||||||||||||  |||||||| ||||    
T  35238250 acacattgacaccgataatattttgagaaaatgacataattcaatataatcacacgtgt 35238192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 2144591 - 2144546
Alignment:
Q  161 ataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 206  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatcacacgtgtc 2144546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 48964115 - 48964070
Alignment:
Q  160 gataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 205  Q
    |||||||||||||||||||||||||||||||  |||||||| ||||    
T  48964115 gataaaattgtgagaaaatgacataattcaatttaatcacaagtgt 48964070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 2143902 - 2143862
Alignment:
Q  164 aaattgtgagaaaatgacataattcaacgtaatcacatgtg 204  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatcacatgtg 2143862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 25956442 - 25956499
Alignment:
Q  149 acactgacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    ||||||||||  ||||||||||||  |||||||||||||||| ||||||||| |||||||    
T  25956442 acactgacacaaataaaattgtga--aaatgacataattcaatgtaatcacaagtgtcgg 25956499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 44172933 - 44172898
Alignment:
Q  170 tgagaaaatgacataattcaacgtaatcacatgtgt 205  Q
    ||||||||||||||||||||| ||||||||||||||    
T  44172933 tgagaaaatgacataattcaatgtaatcacatgtgt 44172898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 22801799 - 22801746
Alignment:
Q  155 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    |||||||| ||||| ||||| ||||||||||||||  ||||||||| |||||||    
T  22801799 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcgg 22801746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 28635223 - 28635178
Alignment:
Q  160 gataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 205  Q
    ||||||||| |||||||||  || ||||||||||||||||||||||    
T  28635223 gataaaattttgagaaaatttcacaattcaacgtaatcacatgtgt 28635178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 24295196 - 24295142
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    |||| |||||||||||||||||||||||| |||| || ||||||||| |||||||    
T  24295196 gacatcgataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgtcgg 24295142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 27733848 - 27733898
Alignment:
Q  155 acaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgt 205  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||| ||||    
T  27733848 acaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgt 27733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 26915299 - 26915246
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 207  Q
    ||||| ||||||||| |||||||||||||||||| || ||||||||| ||||||    
T  26915299 gacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcg 26915246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 42874522 - 42874574
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 206  Q
    ||||||| ||| ||| ||||||||||||||||||||| ||||||||| |||||    
T  42874522 gacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtc 42874574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 31119097 - 31119140
Alignment:
Q  164 aaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 207  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcg 31119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 31548352 - 31548293
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcggcgtca 213  Q
    |||||||||||   | ||| ||||||||||||||||| ||||||||||||||||| ||||    
T  31548352 gacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgtcggtgtca 31548293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 723
Target Start/End: Original strand, 16972048 - 16972113
Alignment:
Q  660 tgtttgaataccttcatgcaaaaatgagttgaacaataaatttgag--taagaatcaattctaaaa 723  Q
    ||||||||||| |||||| |||| ||| |||||||||||||||| |  ||| ||||||||||||||    
T  16972048 tgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaa 16972113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 34074037 - 34073984
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 207  Q
    ||||||||||||||| ||| |||||||||||||| || ||||||| | ||||||    
T  34074037 gacaccgataaaattttgaaaaaatgacataatttaatgtaatcataagtgtcg 34073984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 30080560 - 30080514
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcaca 200  Q
    ||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  30080560 gacactgataaaattttgagaaaatgacataattcaatgtaatcaca 30080514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 38784808 - 38784858
Alignment:
Q  156 caccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtc 206  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||| |||||    
T  38784808 caccgataaaattgtgaaaaaatgatataattcaatgtaatcacaagtgtc 38784858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 10009842 - 10009879
Alignment:
Q  170 tgagaaaatgacataattcaacgtaatcacatgtgtcg 207  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  10009842 tgagaaaatgacataattcaatgtaatcacatgtgtcg 10009879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 10010561 - 10010608
Alignment:
Q  161 ataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||||    
T  10010561 ataaaattttgaaaaaatgacataattcattgtaatcacatgtgtcgg 10010608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 19167637 - 19167574
Alignment:
Q  153 tgacaccgataaaattgtg-agaaaatgacataattcaacgtaatcacatgtgtcggcgtcaga 215  Q
    |||||||||||||||| || | ||||||||| ||||||| ||||||||| ||||||| ||||||    
T  19167637 tgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgtcggtgtcaga 19167574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 26205816 - 26205766
Alignment:
Q  157 accgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcg 207  Q
    |||||||||||| ||||||||||||||||||||  ||||||| | ||||||    
T  26205816 accgataaaattttgagaaaatgacataattcagtgtaatcataggtgtcg 26205766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 440
Target Start/End: Original strand, 42594443 - 42594532
Alignment:
Q  351 ttgaccacgaagaacttcacaaacaccgtcaaccccaccaaactcgagaagagatttcaagtccttttccttcacaattcctgcaatatc 440  Q
    ||||||| ||||||  ||||||||   | ||| |||||||| ||| |||||||||||||||||||| |  ||||||||| | ||||||||    
T  42594443 ttgaccatgaagaaaatcacaaactatgccaatcccaccaagctcaagaagagatttcaagtccttctttttcacaatttcagcaatatc 42594532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 49179774 - 49179720
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    ||||||||||||||| ||||||| ||||||||||| | ||||||||| |||||||    
T  49179774 gacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcgg 49179720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 14338537 - 14338481
Alignment:
Q  159 cgataaaattgtgagaaaatgacataattcaacgtaatcacatgtgtcggcgtcaga 215  Q
    |||||||||| ||| ||||||||||||||||| |||||||||  |||||| ||||||    
T  14338537 cgataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtcggtgtcaga 14338481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 658 - 706
Target Start/End: Original strand, 38332536 - 38332584
Alignment:
Q  658 tatgtttgaataccttcatgcaaaaatgagttgaacaataaatttgagt 706  Q
    |||||||| |||| |||||| | ||||||||||||||||||||||||||    
T  38332536 tatgtttgtatacattcatggataaatgagttgaacaataaatttgagt 38332584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 20691335 - 20691385
Alignment:
Q  170 tgagaaaatgacataattcaacgtaatcacatgtgtcggcgtcagagacac 220  Q
    ||||||||||||||||||||  ||||||| ||||||||| |||||| ||||    
T  20691335 tgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacacac 20691385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 44427857 - 44427895
Alignment:
Q  170 tgagaaaatgacataattcaacgtaatcacatgtgtcgg 208  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  44427857 tgagaaaatgacataatccaatgtaatcacatgtgtcgg 44427895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 18167 - 18124
Alignment:
Q  154 gacaccgataaaattgtgagaaaatgacataattcaacgtaatc 197  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||||    
T  18167 gacaccgataaaattttgagaaaataacataattcaatgtaatc 18124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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