View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_20 (Length: 421)
Name: NF0939_low_20
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 47426007 - 47425813
Alignment:
| Q |
22 |
ggcattgtgcgtgatatgccaagacgtatatataaataacaattgttttatcattttctctaggtttttagatgaactaaatctaaatccttgtcacgaa |
121 |
Q |
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| T |
47426007 |
ggcactgtgcgtgatatgccaagacgtatatataaataacaattattttatcattttctctaggtttttagatgaactaaatctaaatccttgtcatgaa |
47425908 |
T |
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| Q |
122 |
caactaattcatgtggtcgataagctattgatctagtcattctccatgaatatgacgatctttctttccacttctcatctcattcaaccttgtat |
216 |
Q |
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| T |
47425907 |
caactaattcatgtggtcaatccgcaattgatctagtcattcttcatgaatatgacgatctttctttccacttctcatctcattcaaccttgtat |
47425813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 298 - 393
Target Start/End: Complemental strand, 47425731 - 47425636
Alignment:
| Q |
298 |
ttacactaaagtgaaagcttcttgtataacgaatccttaatcgcattagttactcacatatccaagacacttgattagtagtatggtgtccaaact |
393 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47425731 |
ttacactaaagtgaaagcttcttgtataacaaatccttaatcgcattagttactcacatatccaagacacttgattagtagtatggtgtccaaact |
47425636 |
T |
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