View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_22 (Length: 413)
Name: NF0939_low_22
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 4065336 - 4065733
Alignment:
| Q |
1 |
ttcaacaatcatactcatttgcgtattacaaactttacttcaaagttagaatataaagacaaactaataataatgttggaagattgatgagttaaactcg |
100 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4065336 |
ttcaacaaccatactcatttgtgtattacaaactttacttcaaagttagaatataaagacaaactaataataatgttggaagattaatgagttaaactcg |
4065435 |
T |
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| Q |
101 |
aaaaacaccttatgaacgagtataaatcgagtctactaaaacttgagaatcagtttcaaataccacccgctatcatcccttattgacggtcaactaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4065436 |
aaaaacaccttatgaacgagtataaatcgagtctactaaaacttgagaatcagtttcaaataccacccgctatcatcccttattgacggtcaactaaatt |
4065535 |
T |
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| Q |
201 |
gcttcaagttataatgcatttgcttccccttcaatcgatgtcatttttgcgaatttccatcttgtttgggctagcacaaatttgctttcactcgtatctg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4065536 |
gcttcaagttataatgcatttgcttccccttcaatcgttgtcatttttgcgaatttccatcttgtttgggctagcacaaatttgctttcactcgtatctg |
4065635 |
T |
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| Q |
301 |
cattacatttaagccaacctcaaataggtatctcccattttggaatataaaatctataattataactgacctttctggttgaacagttaatgggtaat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4065636 |
cattacatttaagccaacctcaaataggtatctcccattttggaatataaaatctataattataactgacctttctggttgaacagttaatgggtaat |
4065733 |
T |
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