View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_23 (Length: 397)
Name: NF0939_low_23
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 302
Target Start/End: Complemental strand, 10351001 - 10350744
Alignment:
| Q |
30 |
aattgttggttggttatttaggtaatggaataatgccacacatcgtaatggttactgttgttaagcaccttacaccagttcttgaaacatagaaagaatc |
129 |
Q |
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| T |
10351001 |
aattgttggttggttatttaggtaatggaataatgccacacatcgtaatggttactgttgttaagcaccttacaccagttcttgagacatagaaagaatc |
10350902 |
T |
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| Q |
130 |
cattggaatcaaaatattttccctgcattgtaaactagaacaattttgctcgcttaacaaaatcttttaaatgattataaagtttctggtacgattatat |
229 |
Q |
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| T |
10350901 |
cattggaaacaaaatattttccctgcattgtaaactagaacaattttgctcgcttgacaaaatcttttaaa---------------tggtacgattatat |
10350817 |
T |
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| Q |
230 |
tttgaagtgaaaaggatgaaataaatatgataagctctctacgttatttttgttgataattcattggtgagat |
302 |
Q |
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| T |
10350816 |
tttgaagtgaaaaggatgaaataaatatgataagctctctacgttatttttgttgataattcattggtgagat |
10350744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 115 - 239
Target Start/End: Complemental strand, 10355366 - 10355255
Alignment:
| Q |
115 |
aacatagaaagaatccattggaatcaaaatattttccctgcattgtaaactagaacaattttgctcgcttaacaaaatcttttaaatgattataaagttt |
214 |
Q |
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| T |
10355366 |
aacatagaaagaatccattggaatcaaaatattttccctgcactgtaaactagaactattttg-------------atcttttaaatggttataaagttt |
10355280 |
T |
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| Q |
215 |
ctggtacgattatattttgaagtga |
239 |
Q |
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| T |
10355279 |
ctggcacgattattttttgaagtga |
10355255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 10350745 - 10350688
Alignment:
| Q |
324 |
attgacataaaactttctttaatttttctcttaaattacatgaggattagccctatta |
381 |
Q |
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| T |
10350745 |
attgacacaaaactttctttaatttttctcttaaattacatgaggattagccctatta |
10350688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 10355258 - 10355190
Alignment:
| Q |
296 |
gtgagatcttgatttagtgaaatacaatattgacataaaactttctttaatttttctcttaaattacat |
364 |
Q |
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| T |
10355258 |
gtgaggtcttgatttagtgaaatataatattgccacaaaattttcttttatttttctcttaaactacat |
10355190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 10355462 - 10355414
Alignment:
| Q |
34 |
gttggttggttatttaggtaatggaataatgccacacatcgtaatggtt |
82 |
Q |
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| T |
10355462 |
gttggttggttatttaggtaatggaataatgccacatctcgtaatggtt |
10355414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 330
Target Start/End: Complemental strand, 10362042 - 10362001
Alignment:
| Q |
289 |
ttcattggtgagatcttgatttagtgaaatacaatattgaca |
330 |
Q |
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| T |
10362042 |
ttcattggttacgtcttgatttagtgaaatacaatattgaca |
10362001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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