View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_29 (Length: 370)
Name: NF0939_low_29
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 34780822 - 34780518
Alignment:
| Q |
18 |
cacattaaaaatagtttgttttctacaaggacatatcacaacattatatgcataacaaatcccaaattagcttttgaatgcccaaaatcccacattacta |
117 |
Q |
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| T |
34780822 |
cacattaaaaatagtttgttttctacaaggacatatcacaacattatatgcataacaaagcccaaattagcttttgaatgcccaaa-tcccacattacta |
34780724 |
T |
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| Q |
118 |
gcccatttttagtggcttcaaatgcacacaagtccaaaagtaccttctctccccgttcaacatgcttgaagttgtcctctggttgtctccacgcggtcat |
217 |
Q |
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| T |
34780723 |
gcccatttttagtggcttcaaatgcacacaagtccaaaa-taccttctctccccgttcaacatgcttgaagttgtcctctggttgtctccaagcggtcat |
34780625 |
T |
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| Q |
218 |
tcaatccaatttaacggcctgatgacaaagagacggtgagatattgcaactatttatgcatacatttggaattataacataacatttgccactaacataa |
317 |
Q |
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| T |
34780624 |
tcaatccaatttaacggcctgatgacaaagagacggtgagatattgcaactatttatgcatacatttggaattataacataacatttgccactaacataa |
34780525 |
T |
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| Q |
318 |
cattctc |
324 |
Q |
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| ||||| |
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| T |
34780524 |
ctttctc |
34780518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 231
Target Start/End: Complemental strand, 34769386 - 34769192
Alignment:
| Q |
36 |
ttttctacaaggacatatcacaacattatatgcataacaaatcccaaattagcttttgaatgcccaaaatcccacattactagcccatttttagtggctt |
135 |
Q |
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||||||||||||| |||||||| || ||||||||||||| | ||||||||||||||||| ||| ||||||| | | ||||||||| || ||| ||||| |
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| T |
34769386 |
ttttctacaaggatgtatcacaagatgatatgcataacaaggcacaaattagcttttgaataccc-aaatccctcctcactagcccaattctaggggctt |
34769288 |
T |
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| Q |
136 |
caaatgcacacaagtccaaaagtaccttctctccccgttcaacatgcttgaagttgtcctctggttgtctccacgcggtcattcaatccaatttaa |
231 |
Q |
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| T |
34769287 |
ccaatgcacacaattccaaaattaccttcgatccccactcaacatacttgaagtcatagcctggttgtcgcgacacgatcattcaagccaatttaa |
34769192 |
T |
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