View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0939_low_3 (Length: 719)
Name: NF0939_low_3
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 100 - 710
Target Start/End: Original strand, 592956 - 593560
Alignment:
| Q |
100 |
ctcaatgacaaaagagacattaactatatccaagaataacatgatttcatggcaactttaaccacaaagaattggaaagacccaacggaaaatggtggtc |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
592956 |
ctcaatgacaaaagagacattaactatatccaagaataacatgatttcatggcaactttaaccacaaagaattggaaagacccaacggaaaatgggggtc |
593055 |
T |
|
| Q |
200 |
caaaaccagctattgtgccatttaccaaccccnnnnnnntgatttctcataatagggacagtgaaagagagttgtggctacaagaaagactgttaccttg |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
593056 |
caaaaccagctattgtgccatttaccaaccccaaaaaaatgatttctcataatagggacagtgaaagagagttgtggctacaagaaagactgttacctt- |
593154 |
T |
|
| Q |
300 |
ttaccttattgcacttgtcggcacaatgctgaatgtttctcccattgtattgttttcataatacaattgagcatttacgccaagcattctgaactgagaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
593155 |
-------attgcacttgtcggcacaatgctgaatgtttctcccattgtattgttttcataatacaattgagcatttacgccaagcatcctgaactgagaa |
593247 |
T |
|
| Q |
400 |
acaatctacaagtaaaacaagaaaaattagcacggcgaacatgaacaaaaactatctgccacaacttaggaaga-aaaatgct-ttttactaccttaaca |
497 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||| |
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|
| T |
593248 |
acaatctagaagtaaaacaagaaaaattagcacggcgaacatgaacaaaaactatctgccacaacttagaaaaataaaataaaattttactaccttaacg |
593347 |
T |
|
| Q |
498 |
accctcctacgaaactcatatttagtactcgcatactgctgcatcaatgcttcacgaattggagcattgcgacatgtttgccaggcacaaatcctatcca |
597 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
593348 |
accctcctacgaaactcatatttagcactcgcatactgctgcatcaatgcttcacgaattggagcattgcgacatgtttgccaggcacaaatcctatcca |
593447 |
T |
|
| Q |
598 |
cctacaatgttgcaacaacagtgtgacaaaactgagtaacttataaagaacaaatattggatttagcaagcagtcgaatgctcaccttattcaagacaat |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
593448 |
cctacaatgttgcaacaacagtgtgacaaaactgagtaacttataaagaacaaatattggattttgcaagcagtcgaatgctcaccttattcaagacaat |
593547 |
T |
|
| Q |
698 |
gatgaagtctgtg |
710 |
Q |
| |
|
||||||||||||| |
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| T |
593548 |
gatgaagtctgtg |
593560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 258 - 658
Target Start/End: Complemental strand, 183029 - 182626
Alignment:
| Q |
258 |
cagtgaaagagagttgtggctacaagaaagactgttaccttgttaccttattgcacttgtcggcacaatgctgaatgtttctcccattgtattgttttca |
357 |
Q |
| |
|
||||||||||| |||||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
183029 |
cagtgaaagagtgttgtggctacaagaaagacaat-acacagttaccttattgcacttgtcggcacaatgttgaatgtttctcccattgttttgttttca |
182931 |
T |
|
| Q |
358 |
taatacaattgagcatttacgccaagcattctgaactgagaaacaatctacaagtaaaacaagaaaaattagcacggcgaacatgaacaaaaactatctg |
457 |
Q |
| |
|
||||||||||||| |||||| || ||||| ||||||||||||| |||||| |||||||| | ||||||||||| ||| ||||||||||||||| ||||| |
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|
| T |
182930 |
taatacaattgagtatttacaccgagcatcctgaactgagaaataatctagaagtaaaaggaaaaaaattagcatggcaaacatgaacaaaaacaatctg |
182831 |
T |
|
| Q |
458 |
ccacaacttaggaag-----aaaaatgctttttactaccttaacaaccctcctacgaaactcatatttagtactcgcatactgctgcatcaatgcttcac |
552 |
Q |
| |
|
||||||||||| ||| ||||| | |||||||||||||| ||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| |
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|
| T |
182830 |
ccacaacttagaaaggaaaaaaaaacgtcttttactaccttaatgaccctcctacgaaactcgtatttagcactcccatactgttgcatcaatgcttcac |
182731 |
T |
|
| Q |
553 |
gaattggagcattgcgacatgtttgccaggcacaaatcctatccacctacaatgttgcaacaacagtgtgacaaaactgagtaacttataaagaacaaat |
652 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||||| |||| | ||||||||||| |
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|
| T |
182730 |
gaattggagcattacgacatgtttgccaggcacaaatcctgtccacctgcaatgttgcaagaaccatgtgacaaaactgaataacct-gaaagaacaaat |
182632 |
T |
|
| Q |
653 |
attgga |
658 |
Q |
| |
|
|||||| |
|
|
| T |
182631 |
attgga |
182626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 299 - 475
Target Start/End: Original strand, 29219766 - 29219944
Alignment:
| Q |
299 |
gttaccttattgcacttgtcggcacaatgctgaatgtttctcccattgtattg------ttttcataatacaattgagcatttacgccaagcattctgaa |
392 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| |||| ||||||||||| || ||||| || | | |||| |
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|
| T |
29219766 |
gttaccttattgcacttgttggcacaatgttgaatgtttctcccattgttttgtttttatttttataatacaattcagtatttagcccctgactcttgaa |
29219865 |
T |
|
| Q |
393 |
ctgagaaacaatctacaagtaaaacaagaaaaattagcacggcgaacatgaacaaaaactatctgccacaacttaggaagaaa |
475 |
Q |
| |
|
|||| || |||||| ||||||| | |||||||||| ||||||||| ||||||||| |||||||||| ||||| |||||| |
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|
| T |
29219866 |
ttgagcaataatctagaagtaaaccgagaaaaatta----ggcgaacattaacaaaaacaatctgccacagcttagaaagaaa |
29219944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 533 - 628
Target Start/End: Original strand, 29220009 - 29220104
Alignment:
| Q |
533 |
ctgctgcatcaatgcttcacgaattggagcattgcgacatgtttgccaggcacaaatcctatccacctacaatgttgcaacaacagtgtgacaaaa |
628 |
Q |
| |
|
||||||||||| ||||| || |||||||||||| ||||||||| |||| | |||| ||||||||| ||| ||||||| ||||||||||||||| |
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|
| T |
29220009 |
ctgctgcatcactgctttacaaattggagcattaggacatgttttccagcgaggaatcatatccacctgcaaagttgcaagaacagtgtgacaaaa |
29220104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 365
Target Start/End: Complemental strand, 3014471 - 3014404
Alignment:
| Q |
301 |
taccttattgcacttgtcggcacaatgctgaatgttt---ctcccattgtattgttttcataatacaa |
365 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |||| ||||| | ||||| ||||||||| |
|
|
| T |
3014471 |
taccttatagcacttgtgggcacaatgctgaatgtttgtcctccgattgtttcgtttttataatacaa |
3014404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 300 - 467
Target Start/End: Complemental strand, 44605515 - 44605348
Alignment:
| Q |
300 |
ttaccttattgcacttgtcggcacaatgctgaatgtttctcccattgtattgttttcataatacaattgagcatttacgccaagcattctgaactgagaa |
399 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| || |||| ||||||||| | || ||||| || | ||||||||| | |
|
|
| T |
44605515 |
ttaccttattgcacttgtaggcacaatgctgaatgtttctcccatttctttatttttataatacaactcagtatttagcccttgttccttgaactgagta |
44605416 |
T |
|
| Q |
400 |
acaatctacaagtaaaacaagaaaaattagcacggcgaacatgaacaaaaactatctgccacaactta |
467 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||| ||||| ||||||||| |||| |||||||||| |
|
|
| T |
44605415 |
acaatctagaagtaaaacaagaaaaattagcatggcaaacattaacaaaaacaatctaccacaactta |
44605348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 532 - 648
Target Start/End: Complemental strand, 44605278 - 44605162
Alignment:
| Q |
532 |
actgctgcatcaatgcttcacgaattggagcattgcgacatgtttgccaggcacaaatcctatccacctacaatgttgcaacaacagtgtgacaaaactg |
631 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||||||||||||||| |||| || ||| ||| || |||||||||||||||| ||||||||||||||| || |
|
|
| T |
44605278 |
actgctgcttcattgctttacgaattggagcattgcgacatgttttccagccataaagcctgtcaacctacaatgttgcaagaacagtgtgacaaaattg |
44605179 |
T |
|
| Q |
632 |
agtaacttataaagaac |
648 |
Q |
| |
|
|| ||| |||||||||| |
|
|
| T |
44605178 |
aggaacctataaagaac |
44605162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 44605714 - 44605627
Alignment:
| Q |
100 |
ctcaatgacaaaagagacattaactatatccaagaataacatgatttcatggcaactttaaccac--aaagaattggaaagacccaac |
185 |
Q |
| |
|
||||| |||||| ||||||| || |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
44605714 |
ctcaaagacaaaggagacatcaattatatccaagaataacatgattccatggcaactttaaccacataaagaattggaaagacgcaac |
44605627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 299 - 448
Target Start/End: Complemental strand, 44627283 - 44627134
Alignment:
| Q |
299 |
gttaccttattgcacttgtcggcacaatgctgaatgtttctcccattgtattgttttcataatacaattgagcatttacgccaagcattctgaactgaga |
398 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| |||||||||| || ||||| || | ||||||| | |
|
|
| T |
44627283 |
gttaccttattgcacttgtaggcacaatgctgaatgtttcgcccatttctttgtttttgtaatacaattcagtatttagcccttgttccttgaactgggt |
44627184 |
T |
|
| Q |
399 |
aacaatctacaagtaaaacaagaaaaattagcacggcgaacatgaacaaa |
448 |
Q |
| |
|
||| ||||| |||| |||||||||||||||||| || |||||| |||||| |
|
|
| T |
44627183 |
aacgatctagaagtgaaacaagaaaaattagcatggtgaacattaacaaa |
44627134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 532 - 620
Target Start/End: Complemental strand, 44627049 - 44626961
Alignment:
| Q |
532 |
actgctgcatcaatgcttcacgaattggagcattgcgacatgtttgccaggcacaaatcctatccacctacaatgttgcaacaacagtg |
620 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||||||||||||||| |||| || ||| ||| || |||| ||||||||||| ||||||| |
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|
| T |
44627049 |
actgctgcgtcattgctttacgaattggagcattgcgacatgttttccagccataaagcctgtcaacctgcaatgttgcaagaacagtg |
44626961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 532 - 581
Target Start/End: Original strand, 40672373 - 40672422
Alignment:
| Q |
532 |
actgctgcatcaatgcttcacgaattggagcattgcgacatgtttgccag |
581 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| ||||||||| |||| |
|
|
| T |
40672373 |
actgctgcatcaatgctttacgaaatggagcattgggacatgttttccag |
40672422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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