View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_30 (Length: 363)
Name: NF0939_low_30
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 50 - 276
Target Start/End: Original strand, 12571119 - 12571345
Alignment:
| Q |
50 |
attattcttcataggcattatttcagttacaccaacactaatgggcaagagcgattcataagagctcagaagccacaaatcatgttcatggaaggccttg |
149 |
Q |
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| T |
12571119 |
attattcttcataggcattatttcagttacaccaacactaatgggcaagagcgattcataagagttcagaagccacaaatcatgttcatggaaggccttg |
12571218 |
T |
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| Q |
150 |
ttctcctaacaggccaataccagctccagtatgtgtacagatcctcagaaaactattgcaacgtggttctccgctattgatttcactgccaagtgctgca |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12571219 |
ttctcctaacaggccaataccagctccagtatgtgtacagatcctcagaaaactattgcaacgtggttctccgctattgatttcactgccaagtgctgca |
12571318 |
T |
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| Q |
250 |
gtaattcaagacaatcatattattgac |
276 |
Q |
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||||||||||||||||||||||||||| |
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| T |
12571319 |
gtaattcaagacaatcatattattgac |
12571345 |
T |
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