View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_35 (Length: 332)
Name: NF0939_low_35
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 185 - 322
Target Start/End: Original strand, 26490872 - 26491009
Alignment:
| Q |
185 |
ttctggttagtttatgtgcagtggtctgttttgttcccctgcatttttatggttttttcgggtcctattaggtgctgccagcagctgtttgcggtggttt |
284 |
Q |
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| T |
26490872 |
ttctggttagtttatgtgcagtggtctgttttgttcccctgcatttttctggttttttggggtccttttaggtgctgccagcagctgtttgcggcggttt |
26490971 |
T |
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| Q |
285 |
tttgcttgttgtgcggctggtttttggttctttctctg |
322 |
Q |
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| T |
26490972 |
tttgcttgttgtgcggctggtttttggttctttctctg |
26491009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 26490796 - 26490857
Alignment:
| Q |
98 |
acttgtttattttacgagtggtgttggaaccctcgcttctgtcttggtgcttaattagggcc |
159 |
Q |
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| T |
26490796 |
acttgtttattttacgagcggtgttggaaccctcgcttctgtcttagtgcttaattagggcc |
26490857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 20990828 - 20990864
Alignment:
| Q |
99 |
cttgtttattttacgagtggtgttggaaccctcgctt |
135 |
Q |
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| T |
20990828 |
cttgtttattctacgagtggtgttggaaccctcgctt |
20990864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 6945281 - 6945238
Alignment:
| Q |
98 |
acttgtttattttacgagtggtgttggaaccctcgcttctgtct |
141 |
Q |
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| T |
6945281 |
acttgtttgttttacgagtggtgatggaaccctcgcttttgtct |
6945238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 43460262 - 43460307
Alignment:
| Q |
99 |
cttgtttattttacgagtggtgttggaaccctcgcttctgtcttgg |
144 |
Q |
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| T |
43460262 |
cttgtttgttttacgagtggtgctggaatcctcgcttttgtcttgg |
43460307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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