View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_37 (Length: 327)
Name: NF0939_low_37
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 311
Target Start/End: Complemental strand, 35263124 - 35262841
Alignment:
| Q |
30 |
tcagtttaggcatagaaaatgaagaagtccagatgaatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattag |
129 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35263124 |
tcagttcaggcatagaaaatgaagaagtccagatgaatttgttagagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattag |
35263025 |
T |
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| Q |
130 |
gcctaaataacacaattaagcagcatttactatactatgcaaaaggggt----tgtcttggttggcagaataatgtttcaagagttggaagtcccaactt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35263024 |
gcctaaataacacaattaagcagcatttactatactatgc--aaggggtcttgtgtcttggttggcagaataatgtttctagagttggaagtcccaactt |
35262927 |
T |
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| Q |
226 |
ttcaacatactatatattattgttccaaactgtttcttcgtatagtatatacacactttatattgcttagtgctgttcagtatatt |
311 |
Q |
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| T |
35262926 |
ttcaacatactatatattattgttccaaactgtttcttcgtatagtatatacacactttatattgcttagtgttgttcagtatatt |
35262841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 102 - 309
Target Start/End: Complemental strand, 35248311 - 35248103
Alignment:
| Q |
102 |
gtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatttactatactatgcaaaaggggt----tgtcttggttggcagaata |
197 |
Q |
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||||||| |||||||||||||| |||| ||||| ||| ||||||||||| |||| ||| ||||||||| ||||| |||||||| |||||||| | |
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| T |
35248311 |
gtctcttatttgaaggaatagaagttagacctaagtaatacaattaagcaacattcactgaactatgcaa--ggggtcttatgtcttggatggcagaaca |
35248214 |
T |
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| Q |
198 |
atgtttcaagagttggaagtcccaacttttcaacatactatatattattgttccaaactgtttcttcgtatagtatatacacactttatattgcttagtg |
297 |
Q |
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| T |
35248213 |
acgtttgaagatttg-aagttccaacttttcaacatattatatattattgttctaaactctttctttgtaaaatatattcacactttatattgcttattg |
35248115 |
T |
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| Q |
298 |
ctgttcagtata |
309 |
Q |
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| T |
35248114 |
ttcttcagtata |
35248103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 171
Target Start/End: Complemental strand, 35270542 - 35270406
Alignment:
| Q |
37 |
aggcatagaaaatgaagaagtccagatgaatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaa- |
135 |
Q |
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||||||||||||||||||||||||||||||| || | ||| ||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||||| |
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| T |
35270542 |
aggcatagaaaatgaagaagtccagatgaatgtgatacagacaaagggtggtaattggaagagaggtctagttcttgaaggaatagaagttaggcctaag |
35270443 |
T |
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| Q |
136 |
-ataacacaattaagcagcatttactatactatgcaa |
171 |
Q |
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||||||||||||| || |||| ||| ||||||||| |
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| T |
35270442 |
tataacacaattaaccaacattcactgaactatgcaa |
35270406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 35276631 - 35276531
Alignment:
| Q |
49 |
tgaagaagtccagatgaatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaa |
148 |
Q |
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||||||||| ||||||||| || |||||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||| |
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| T |
35276631 |
tgaagaagttcagatgaatgtgatggagataaagggtggt---tggaagagtggtctctttcttgaagggatataaattaggcctaagtaacaccattaa |
35276535 |
T |
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| Q |
149 |
gcag |
152 |
Q |
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|||| |
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| T |
35276534 |
gcag |
35276531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 35252027 - 35251966
Alignment:
| Q |
219 |
ccaacttttcaacatactatatattattgttccaaactgtttcttcgtatagtatatacaca |
280 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| |||| |
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| T |
35252027 |
ccaacttctcaacatactatatattattgttccaaactgtttcttcggaaagtatatgcaca |
35251966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 35147419 - 35147351
Alignment:
| Q |
88 |
taattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatt |
156 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |||||||||| ||| || |||||||| |||| |
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| T |
35147419 |
taattggaagagtggtctctttgttgaaggaatagaagttaggcctaagtaagaccattaagcaacatt |
35147351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 35199987 - 35199926
Alignment:
| Q |
88 |
taattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaag |
149 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| | |||||||| ||| ||||||||| |
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| T |
35199987 |
taattcgaagagtggtctctttcttgaaggaatagaagtcaggcctaagtaagacaattaag |
35199926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 35190427 - 35190359
Alignment:
| Q |
88 |
taattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatt |
156 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||| ||| || ||| |||| |||| |
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| T |
35190427 |
taattggaagagaggtctctttcttgaaggaatagaagttaggcctaagtaagaccattcagcaacatt |
35190359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 35225019 - 35224921
Alignment:
| Q |
37 |
aggcatagaaaatgaagaagtccagatgaatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaa |
135 |
Q |
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|||| ||||| ||||||||||||| |||| | | | || ||||||| |||| |||||||||| ||| ||||| |||||||||||||| |||||||||| |
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| T |
35225019 |
aggcctagaagatgaagaagtccaaatgagtgttattgatataaagggtggtcattggaagagaggtttctttgttgaaggaatagaagttaggcctaa |
35224921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 35219114 - 35219069
Alignment:
| Q |
90 |
attggaagagtggtctctttcttgaaggaatagaaattaggcctaa |
135 |
Q |
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|||||||||| ||| ||||| |||||||||||||| |||||||||| |
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| T |
35219114 |
attggaagagaggtttctttgttgaaggaatagaagttaggcctaa |
35219069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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