View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_45 (Length: 292)
Name: NF0939_low_45
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 2855792 - 2856004
Alignment:
| Q |
15 |
gatggcgaatatgggacttttttgcagctcagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagcca |
114 |
Q |
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| T |
2855792 |
gatggcgaatatgggacttttttgcagctcagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagcca |
2855891 |
T |
|
| Q |
115 |
agtttggaggaagtgaagatggcttttgatgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagttatgtgtattttgggat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2855892 |
agtttggaggaagtgaagatggcttttgatgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagttatgtgtattttgggat |
2855991 |
T |
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| Q |
215 |
ttaaggaaggttc |
227 |
Q |
| |
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||||||||||||| |
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| T |
2855992 |
ttaaggaaggttc |
2856004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 34 - 231
Target Start/End: Original strand, 2851714 - 2851916
Alignment:
| Q |
34 |
ttttgcagctcagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttggaggaagtgaaga |
133 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||| |||||| || ||||||||||||||||||||| ||| |||| ||||||||||||| |
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| T |
2851714 |
ttttgtagctcagaaagtgatgaacttgaagaaaaatatggttcaaaggagcttcttgaattgtttgatgagaatgaaccatgtttagaggaagtgaaga |
2851813 |
T |
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| Q |
134 |
tggcttttg-------atgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagttatgtgtattttgggatttaaggaaggtt |
226 |
Q |
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| T |
2851814 |
tgacttttgaatttttatggttttaatgagaacaaagatgg--ttattgatgcaatggagttgcaaagagttatgtgtattttgggatttaaggaaggtt |
2851911 |
T |
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| Q |
227 |
cagaa |
231 |
Q |
| |
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|||| |
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| T |
2851912 |
tagaa |
2851916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 8216081 - 8216297
Alignment:
| Q |
15 |
gatggcgaatatgggacttttttgcagctcagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagcca |
114 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8216081 |
gatggcgaatatgggacttttttgcagcttagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagcca |
8216180 |
T |
|
| Q |
115 |
agtttggaggaagtgaagatggcttttgatgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagttatgtgtattttgggat |
214 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
8216181 |
agtttggaggaagtttagatggcttttgatgtttttgatgagaacaaagatggttttattgattcaatggagttgaaaaatgttatgtgtattttgggat |
8216280 |
T |
|
| Q |
215 |
ttaaggaaggttcagaa |
231 |
Q |
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||||||||||||||||| |
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| T |
8216281 |
ttaaggaaggttcagaa |
8216297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 10477711 - 10477927
Alignment:
| Q |
15 |
gatggcgaatatgggacttttttgcagctcagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagcca |
114 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||| || || ||||||||||||||||||||||||||||| |
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| T |
10477711 |
gatggcgaaaatgggaattttttgcagctcagaaagtgatgaacttgatgaaaaatatggttcaaatgaactttctgaattgtttgatgagaatgagcca |
10477810 |
T |
|
| Q |
115 |
agtttggaggaagtgaagatggcttttgatgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagttatgtgtattttgggat |
214 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||||| |
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| T |
10477811 |
agtttggaggaagtgaagatggcttttgacgtttttgatgagaacaaagatggatttattgatgcaaaggaattgcaaagagttatgtgtattttgggat |
10477910 |
T |
|
| Q |
215 |
ttaaggaaggttcagaa |
231 |
Q |
| |
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| || ||||||| |||| |
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| T |
10477911 |
tgaatgaaggtttagaa |
10477927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 52971379 - 52971172
Alignment:
| Q |
25 |
atgggacttttttgcagctcagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttggagg |
124 |
Q |
| |
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|||||| ||||||||||||||||||| || |||||||||||||| ||| |||| |||||| ||| |||| ||||||| ||||||||||| |||||||||| |
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| T |
52971379 |
atgggatttttttgcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggagg |
52971280 |
T |
|
| Q |
125 |
aagtgaagatggcttttgatgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagttatgtgtattttgggatttaaggaagg |
224 |
Q |
| |
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| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||||||||| || |||| |
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| T |
52971279 |
agttgaagcaagcttttgatgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggattgaaacaagg |
52971180 |
T |
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| Q |
225 |
ttcagaat |
232 |
Q |
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||||||| |
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| T |
52971179 |
atcagaat |
52971172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 52967483 - 52967362
Alignment:
| Q |
22 |
aatatgggacttttttgcagctcagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttgg |
121 |
Q |
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||||||| | ||||| ||||||||| |||||| ||||||| |||| |||||||| |||||| ||| |||| ||||| | ||||||||||||| ||| |
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| T |
52967483 |
aatatggaattttttggcagctcagtaagtgagaaacttgagtaaaagtatagttc-aaggaggtttgtgaagtgttttaggagaatgagccaaacttg- |
52967386 |
T |
|
| Q |
122 |
aggaagtgaagatggcttttgatg |
145 |
Q |
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|||| ||||||||||||||||||| |
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| T |
52967385 |
aggaggtgaagatggcttttgatg |
52967362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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