View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0939_low_49 (Length: 266)
Name: NF0939_low_49
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_49 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 1696590 - 1696824
Alignment:
| Q |
29 |
aagttgatgtgagatgccataacattagatagccattactagttcttacatgaccactgatctgcttgaaaaatgagnnnnnnnnnnn------aacaca |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1696590 |
aagttgatatgagatgccataacattagatagccattactggttcttacatgaccactgatctgcttgaaaaatgagttttttttattttttttaacaca |
1696689 |
T |
|
| Q |
123 |
aacctgcttgaaactgttaatttttggccttataagcattttcttacacaaa--tgcatgatattgatatgcatgctcatcaataagggtattgatgaaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1696690 |
aacctgcttgaaactgttaatttttggccttataagcattttcttacacaaacctgcatgat------atgcatgctcatcaataagggtattgatgaaa |
1696783 |
T |
|
| Q |
221 |
tgtacttagtaaatagttgatatgcatgcagaataatctac |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1696784 |
tgtacttagtaaatagttgatatgcatgcagaataatctac |
1696824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University