View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0939_low_5 (Length: 664)

Name: NF0939_low_5
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0939_low_5
NF0939_low_5
[»] chr3 (4 HSPs)
chr3 (261-613)||(44803320-44803671)
chr3 (17-199)||(44803076-44803258)
chr3 (583-613)||(44799820-44799850)
chr3 (104-148)||(8845207-8845251)
[»] chr5 (4 HSPs)
chr5 (456-613)||(6601653-6601808)
chr5 (518-594)||(6609203-6609279)
chr5 (104-146)||(35695230-35695272)
chr5 (87-146)||(4460462-4460526)
[»] chr4 (2 HSPs)
chr4 (104-172)||(4605838-4605906)
chr4 (104-148)||(6484697-6484741)
[»] chr8 (1 HSPs)
chr8 (103-145)||(40038944-40038986)
[»] chr7 (1 HSPs)
chr7 (103-144)||(32358827-32358868)
[»] chr2 (1 HSPs)
chr2 (116-148)||(29241628-29241660)


Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 261 - 613
Target Start/End: Original strand, 44803320 - 44803671
Alignment:
Q  261 atgtttctgaagaggaagaaccaataagaatttccctnnnnnnnctagaatttgatgcgctccctcatcttcatctttgtgttgctgccacatctcattc 360  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44803320 atgtttctgaagaggaagaaccaataagaatttccctaaaaaaactagaatttgatgcgctccctcatcttcatctttgtgttgctgccacatctcattc 44803419  T
Q  361 tttctaaatcaattaatcaacaacaaccttctatttctttcctccatccaatcatttttggttgcccaaggcaagtaagtagaaagaaacaaatgattgc 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44803420 tttctaaatcaattaatcaacaacaaccttctatttctttcctccatccaatcatttt-ggttgcccaaggcaagtaagtagaaagaaacaaatgattgc 44803518  T
Q  461 attcatgcttcaaacattattaattaaaacttcatgaactctttcagagtgaatggtcattttgagctgtacctcttggtcgtagagatgggacaacaac 560  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44803519 attcatgcttccaacattattaattaaaacttcatgaactctttcagagtgaatggtcattttgagctgtacctcttggtcgtagagatgggacaacaac 44803618  T
Q  561 aagtgagagtcaggcaaataacttgccatcacccaccctttgaacctctagaa 613  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44803619 aagtgagagtcaggaaaataacttgccatcacccaccctttgaacctctagaa 44803671  T

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Target: chr3; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 44803076 - 44803258
Alignment:
Q  17 cttggggtgaaaaccttgatatatacacgttttatcgctcggcttaatgaaataagttacattcttatcttgataccaacaatatatttatatgcaattt 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44803076 cttggggtgaaaaccttgatatatacacgttttatcgctccgcttaatgaaataagttacattcttatcttgataccaacaatatatgtatatgcaattt 44803175  T
Q  117 tgtttaaatgtataattggaagtgaaaaagtctattcaaaatcatgtaatctctttgtatgctgtatagattgtgttcgtgta 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44803176 tgtttaaatgtataattggaagtgaaaaagtctattcaaaatcatgtaatctctttgtatgcagtatagattgtgttcgtgta 44803258  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 613
Target Start/End: Original strand, 44799820 - 44799850
Alignment:
Q  583 ttgccatcacccaccctttgaacctctagaa 613  Q
    |||||||||||||||||||||||||||||||    
T  44799820 ttgccatcacccaccctttgaacctctagaa 44799850  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 8845207 - 8845251
Alignment:
Q  104 ttatatgcaattttgtttaaatgtataattggaagtgaaaaagtc 148  Q
    ||||| ||||||||||| ||| ||||||||||||||||| |||||    
T  8845207 ttataggcaattttgttgaaaggtataattggaagtgaacaagtc 8845251  T

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Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 456 - 613
Target Start/End: Complemental strand, 6601808 - 6601653
Alignment:
Q  456 attgcattcatgcttcaaacat--tattaattaaaacttcatgaactctttcagagtgaatggtcattttgagctgtacctcttggtcgtagagatggga 553  Q
    ||||||| |||||||| |||||  ||||||| |||||||| | || | ||||||||| || || ||||||| |||||||||||||||||||||||||| |    
T  6601808 attgcatgcatgcttccaacatattattaatcaaaacttctttaattatttcagagtaaagggccattttgggctgtacctcttggtcgtagagatggaa 6601709  T
Q  554 caacaacaagtgagagtcaggcaaataacttgccatcacccaccctttgaacctctagaa 613  Q
    ||||  | ||||||||  | |||||||||||||||||    |||||||||||||||||||    
T  6601708 caaccgcgagtgagagcgacgcaaataacttgccatc----accctttgaacctctagaa 6601653  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 518 - 594
Target Start/End: Complemental strand, 6609279 - 6609203
Alignment:
Q  518 cattttgagctgtacctcttggtcgtagagatgggacaacaacaagtgagagtcaggcaaataacttgccatcaccc 594  Q
    ||||||| ||||| |||||||||||||||||||| |||||  | ||||||||| |||||||||||||||||||||||    
T  6609279 cattttgggctgtgcctcttggtcgtagagatggcacaaccgcgagtgagagtgaggcaaataacttgccatcaccc 6609203  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 35695272 - 35695230
Alignment:
Q  104 ttatatgcaattttgtttaaatgtataattggaagtgaaaaag 146  Q
    |||||||||| |||||||||  |||||||||||||||||||||    
T  35695272 ttatatgcaaatttgtttaagggtataattggaagtgaaaaag 35695230  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 4460526 - 4460462
Alignment:
Q  87 tgataccaacaatata-----tttatatgcaattttgtttaaatgtataattggaagtgaaaaag 146  Q
    ||||||||||||||||     |||||| | ||||||||||||  |||||||||||||||||||||    
T  4460526 tgataccaacaatatagcatttttataggtaattttgtttaagggtataattggaagtgaaaaag 4460462  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 4605838 - 4605906
Alignment:
Q  104 ttatatgcaattttgtttaaatgtataattggaagtgaaaaagtctattcaaaatcatgtaatctcttt 172  Q
    |||||||||| |||||||||  ||| | |||||||||||| |||| |||||||| |||||| |||||||    
T  4605838 ttatatgcaaatttgtttaagcgtacacttggaagtgaaagagtcaattcaaaaccatgtattctcttt 4605906  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 6484741 - 6484697
Alignment:
Q  104 ttatatgcaattttgtttaaatgtataattggaagtgaaaaagtc 148  Q
    |||||||||| |||||||||  |||||||||||||||||||||||    
T  6484741 ttatatgcaaatttgtttaagggtataattggaagtgaaaaagtc 6484697  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 40038944 - 40038986
Alignment:
Q  103 tttatatgcaattttgtttaaatgtataattggaagtgaaaaa 145  Q
    |||||||| || ||||||||| |||||||||||||||||||||    
T  40038944 tttatatgtaaatttgtttaagtgtataattggaagtgaaaaa 40038986  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 32358868 - 32358827
Alignment:
Q  103 tttatatgcaattttgtttaaatgtataattggaagtgaaaa 144  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  32358868 tttatatgcaaatttgtttaggtgtataattggaagtgaaaa 32358827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 29241660 - 29241628
Alignment:
Q  116 ttgtttaaatgtataattggaagtgaaaaagtc 148  Q
    ||||||||||||||||||| |||||||||||||    
T  29241660 ttgtttaaatgtataattgaaagtgaaaaagtc 29241628  T

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