View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0939_low_55 (Length: 251)

Name: NF0939_low_55
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0939_low_55
NF0939_low_55
[»] chr3 (18 HSPs)
chr3 (37-251)||(30515915-30516133)
chr3 (29-251)||(30505149-30505375)
chr3 (29-250)||(30520135-30520360)
chr3 (30-250)||(30489304-30489540)
chr3 (167-251)||(30485658-30485741)
chr3 (29-141)||(30454272-30454384)
chr3 (29-136)||(30522124-30522231)
chr3 (36-136)||(8411945-8412045)
chr3 (29-129)||(30503410-30503509)
chr3 (29-130)||(30483313-30483416)
chr3 (31-141)||(30451993-30452105)
chr3 (29-116)||(30487304-30487393)
chr3 (81-141)||(30481198-30481259)
chr3 (43-111)||(30525157-30525225)
chr3 (29-100)||(30518489-30518560)
chr3 (45-130)||(30449702-30449783)
chr3 (83-136)||(30506725-30506778)
chr3 (53-136)||(31829621-31829702)
[»] chr4 (1 HSPs)
chr4 (68-136)||(17856837-17856904)
[»] chr1 (1 HSPs)
chr1 (36-251)||(16933218-16933433)
[»] chr6 (1 HSPs)
chr6 (55-137)||(10594235-10594317)
[»] chr5 (2 HSPs)
chr5 (29-136)||(38510559-38510665)
chr5 (34-136)||(38511338-38511440)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 37 - 251
Target Start/End: Complemental strand, 30516133 - 30515915
Alignment:
Q  37 taagagaaagaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatggcggcaccttcaagttct 136  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30516133 taagagaaagaggaagaggagaaagaagacgaagatagaatatgagataccaaagccaaacccctttggtgaaaagggtatggcggcaacttcaagttct 30516034  T
Q  137 aactttcttcatt------ttcatttcannnnnnnngttgatattgataaatggagaggatcctaactcttgatagaagttgggttatgattttttgaat 230  Q
    ||| |||||||||      ||| |||||        ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  30516033 aaccttcttcattttcttattcttttca-tttttttgttgatattgataaatggagaggatcctaactc-tgatagaagttgggttatgattttctgaat 30515936  T
Q  231 aaattgggtatttcccactaa 251  Q
    |||||||| ||||||||||||    
T  30515935 aaattgggcatttcccactaa 30515915  T

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Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 30505375 - 30505149
Alignment:
Q  29 agggacagtaagagaaagaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatggcggcacctt 128  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||    
T  30505375 agggacagtaagagaaagaggaagaggagaaagaagacgaagatagaatatgagatgccaaagccagacccttttggtgaaaagggtatggcggcacgtt 30505276  T
Q  129 caagttctaactttcttcattttca-----tttcannnnnnnngttgatattgataaatggagaggatcctaactcttgatagaagttgggttatgattt 223  Q
    ||||||||||  |||||||||||||     ||| |        ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30505275 caagttctaatcttcttcattttcattttcttttaatttttttgttgatattgataaatggagaggatcctaactc-tgatagaagttgggttatgattt 30505177  T
Q  224 tttgaataaattgggtatttcccactaa 251  Q
    |  ||| |||| ||||||||||||||||    
T  30505176 tccgaacaaatagggtatttcccactaa 30505149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 30520360 - 30520135
Alignment:
Q  29 agggacagtaagagaaagaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatggcggcacctt 128  Q
    |||||| ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30520360 agggactgtaagagaaagaggaagaggacaaagaagaggaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatggcggcacctt 30520261  T
Q  129 caagttctaactttc------ttcattttcatttcannnnnnnngttgatattgataaatggagaggatcctaactcttgatagaagttgggttatgatt 222  Q
    ||||||||||| |||      ||| ||||| | |||        ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  30520260 caagttctaaccttcattatattctttttcttctca-tgtttttgttgatattgataaatggagaggattctaactc-tgatagaagttgggttatgatt 30520163  T
Q  223 ttttgaataaattgggtatttcccacta 250  Q
    ||  || |||||||||||||||||||||    
T  30520162 ttccgattaaattgggtatttcccacta 30520135  T

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Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 30489540 - 30489304
Alignment:
Q  30 gggacagtaagagaaagaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggt------atggcggc 123  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||    
T  30489540 gggactgtaagagaaagaggaagaggagaaagaagaggaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatgggtatggcggc 30489441  T
Q  124 accttcaagttctaactttc------------ttcattttcatttcannnnnnnngttgatattgataaatggagaggatcctaactcttgatagaagtt 211  Q
    |||||||||||||||| |||            ||| ||||| |||||        ||||||| |||||||||||||| |||||||||| |||||||||||    
T  30489440 accttcaagttctaaccttcattattttctttttctttttcttttca-tgtttttgttgatactgataaatggagagaatcctaactc-tgatagaagtt 30489343  T
Q  212 gggttatgattttttgaataaattgggtatttcccacta 250  Q
    || ||||||||||  || |||||||||| ||||||||||    
T  30489342 ggattatgattttccgattaaattgggtgtttcccacta 30489304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 30485741 - 30485658
Alignment:
Q  167 gttgatattgataaatggagaggatcctaactcttgatagaagttgggttatgattttttgaataaattgggtatttcccactaa 251  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30485741 gttgatattgataaatggagaggatcctaactct-gatagaagttgggttatgattttctgaataaattgggtatttcccactaa 30485658  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 30454384 - 30454272
Alignment:
Q  29 agggacagtaagagaaagaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagccaaac-ccctttggtgaaaagggtatggcggcacct 127  Q
    |||||||||||||||||||||||||||||||| |||  ||||| ||||| ||||||||||||||||||  |||||||||||||||||||| |||||||||    
T  30454384 agggacagtaagagaaagaggaagaggagaaa-aagaagaagacagaatctgagatgccaaagccaaaagccctttggtgaaaagggtatagcggcacct 30454286  T
Q  128 tcaagttctaactt 141  Q
    |||| |||| ||||    
T  30454285 tcaacttctgactt 30454272  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 30522231 - 30522124
Alignment:
Q  29 agggacagtaagagaaagaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatggcggcacctt 128  Q
    ||||||||||||||||||| ||||||||| |||||| |||||| |||||  ||||| ||||||||||| ||||||||||| |||||| || ||||||| |    
T  30522231 agggacagtaagagaaagaagaagaggaggaagaagacgaagacagaatccgagataccaaagccaaaaccctttggtgacaagggtgtgacggcaccat 30522132  T
Q  129 caagttct 136  Q
    ||||||||    
T  30522131 caagttct 30522124  T

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Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 8411945 - 8412045
Alignment:
Q  36 gtaagagaaagaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatggcggcaccttcaagttc 135  Q
    |||||||||| ||||||||||||| ||||   |||| ||||| |||||| ||||||||||||||||||||||||||| || |||||||||||||| ||||    
T  8411945 gtaagagaaaaaggaagaggagaatgaagatcaagacagaatctgagataccaaagccaaacccctttggtgaaaagagtgtggcggcaccttcatgttc 8412044  T
Q  136 t 136  Q
    |    
T  8412045 t 8412045  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 30503509 - 30503410
Alignment:
Q  29 agggacagtaagagaaagaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagcc-aaacccctttggtgaaaagggtatggcggcacct 127  Q
    |||||||||||||||  ||||||||||||||| |||  ||||| |||||| |||||||||||||| ||| ||||| |||||||||||||| |||||||||    
T  30503509 agggacagtaagaga--gaggaagaggagaaaaaagaagaagacagaatacgagatgccaaagccaaaagcccttgggtgaaaagggtatagcggcacct 30503412  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 30483416 - 30483313
Alignment:
Q  29 agggacagtaagagaaagaggaagaggagaaagaaggcgaagatagaatatg-agatgccaaagcca-aacccctttggtgaaaagggtatggcggcacc 126  Q
    ||||||||||||||| ||||||||||||||||||||  ||||| ||||| || || ||||||||||| |||| |||||| ||||| ||||| ||||||||    
T  30483416 agggacagtaagagagagaggaagaggagaaagaagaagaagacagaatctgaaggtgccaaagccataaccgctttggggaaaacggtatagcggcacc 30483317  T
Q  127 ttca 130  Q
    ||||    
T  30483316 ttca 30483313  T

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Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 30452105 - 30451993
Alignment:
Q  31 ggacagtaagagaaagaggaagaggaga-aagaaggcgaagatagaatatgagatgccaaagccaaa-cccctttggtgaaaagggtatggcggcacctt 128  Q
    ||||||||||||| |||||||||| ||| || |||  ||||  ||||| |||||||||||||||||| |||||||||| ||||| |||| ||||||||||    
T  30452105 ggacagtaagagagagaggaagagcagagaaaaagaagaagccagaatgtgagatgccaaagccaaaacccctttggtaaaaagagtatagcggcacctt 30452006  T
Q  129 caagttctaactt 141  Q
    ||| |||| ||||    
T  30452005 caaattctgactt 30451993  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 30487393 - 30487304
Alignment:
Q  29 agggacagtaagagaaagaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccc--tttggtgaaaagggta 116  Q
    |||||| | ||||||||||||||||||||||||||| |||||| ||||  |||||| |||||  ||||||||  |||| |||||||||||    
T  30487393 agggacggaaagagaaagaggaagaggagaaagaagacgaagacagaaactgagataccaaacgcaaacccccttttgatgaaaagggta 30487304  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 30481259 - 30481198
Alignment:
Q  81 agatgccaaagccaaac-ccctttggtgaaaagggtatggcggcaccttcaagttctaactt 141  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||| |||| ||||    
T  30481259 agatgccaaagccaaaagccctttggtgaaaagggtatagcggcaccttcaacttctgactt 30481198  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 30525225 - 30525157
Alignment:
Q  43 aaagaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccctttggtgaaaa 111  Q
    |||||| | |||||||| |||| |||||||||||  |||||| ||||||||||||||||||||| ||||    
T  30525225 aaagagaaggaggagaaggaagacgaagatagaacctgagataccaaagccaaacccctttggtaaaaa 30525157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 30518560 - 30518489
Alignment:
Q  29 agggacagtaagagaaagaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccc 100  Q
    |||||| ||||||||||||||||||||||||||| |  ||||| ||||  |||||| ||||| |||||||||    
T  30518560 agggacggtaagagaaagaggaagaggagaaagaggatgaagacagaaactgagataccaaacccaaacccc 30518489  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 30449783 - 30449702
Alignment:
Q  45 agaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatggcggcaccttca 130  Q
    |||||| |||||||||||||   |||| ||||| |||||  |||||||||||||| ||| ||||||||||| || |||||||||||    
T  30449783 agaggaggaggagaaagaag---aagacagaatctgagacaccaaagccaaaccc-tttagtgaaaagggtgtgacggcaccttca 30449702  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 30506778 - 30506725
Alignment:
Q  83 atgccaaagccaaacccctttggtgaaaagggtatggcggcaccttcaagttct 136  Q
    ||||||||| |||| ||||||||||| |||||| || |||||||||| ||||||    
T  30506778 atgccaaagtcaaaaccctttggtgacaagggtgtgacggcaccttccagttct 30506725  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 31829702 - 31829621
Alignment:
Q  53 aggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatggcggcaccttcaagttct 136  Q
    |||||||| ||| |||||| || | ||||||| ||||| | ||  ||||| | |||||||||| ||||||||||||||||||||    
T  31829702 aggagaaaaaagacgaagacaggacatgagataccaaaccgaa--cccttagatgaaaagggtttggcggcaccttcaagttct 31829621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 136
Target Start/End: Original strand, 17856837 - 17856904
Alignment:
Q  68 aagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatggcggcaccttcaagttct 136  Q
    |||||||||| |||||| ||||||| |||||| ||||||||||||||| ||||||||||||||||||||    
T  17856837 aagatagaatctgagataccaaagcaaaaccc-tttggtgaaaagggtgtggcggcaccttcaagttct 17856904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 16933218 - 16933433
Alignment:
Q  36 gtaagagaaagaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatggcggcaccttcaagttc 135  Q
    |||||||||||||||||||| |||||||| | ||||    |  |||||| |||||||||||||| |||||||||||  || ||||| |||||||||||||    
T  16933218 gtaagagaaagaggaagaggggaaagaagactaaga----acctgagataccaaagccaaacccatttggtgaaaatagtgtggcgacaccttcaagttc 16933313  T
Q  136 t----aactttctt--cattttcatttcannnnnnnngttgatattgataaatggagaggatcctaactcttgatagaagttgggttatgattttttgaa 229  Q
    |    ||| || ||  | ||||| |||||        || || ||||||||||||||| |||||||||||  ||||||||||||||| ||||||   ||     
T  16933314 ttaacaacgttgttttctttttcttttcatttctct-gtggacattgataaatggagaagatcctaactc-cgatagaagttgggttctgatttcccgat 16933411  T
Q  230 taaattgggtatttcccactaa 251  Q
    | ||||||||||||||||||||    
T  16933412 tgaattgggtatttcccactaa 16933433  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 10594317 - 10594235
Alignment:
Q  55 gagaaagaaggcgaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatggcggcaccttcaagttcta 137  Q
    |||||||||| | |||| |||||||||||| ||||| || ||||| |||| |||||||||  |||||||||| ||||||||||    
T  10594317 gagaaagaagacaaagacagaatatgagataccaaaaccgaacccttttgatgaaaaggggttggcggcaccatcaagttcta 10594235  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 38510665 - 38510559
Alignment:
Q  29 agggacagtaagagaaagaggaagaggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatggcggcacctt 128  Q
    |||||||||| |||||||| ||| || |||||||||  | ||| ||||| |||||| ||||||||||| || |||  |||||| ||  ||||||||||||    
T  38510665 agggacagtatgagaaagatgaaaagtagaaagaagatgcagacagaatctgagataccaaagccaaa-ccttttcatgaaaatggcgtggcggcacctt 38510567  T
Q  129 caagttct 136  Q
    ||||||||    
T  38510566 caagttct 38510559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 38511440 - 38511338
Alignment:
Q  34 cagtaagagaaagaggaaga-ggagaaagaaggcgaagatagaatatgagatgccaaagccaaacccctttggtgaaaagggtatggcggcaccttcaag 132  Q
    |||||||||||||||||| | |||||||||||  | ||| ||||| |||||| ||||||||||| ||  ||| ||||||||   |||||||| |||||||    
T  38511440 cagtaagagaaagaggaaaaaggagaaagaagatgcagacagaatctgagataccaaagccaaa-ccaattgatgaaaaggacgtggcggcatcttcaag 38511342  T
Q  133 ttct 136  Q
    ||||    
T  38511341 ttct 38511338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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