View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0939_low_58 (Length: 221)
Name: NF0939_low_58
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_58 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 46630832 - 46630978
Alignment:
| Q |
47 |
ggaagaaggacaaagaaaaagagaaggaaaaatgtaacacaaaccagaatttttcaaatggaacagaaaatccaactactcctgtttcaacaacaccctc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630832 |
ggaagaaggacaaagaaaaagagaaggaaaaatgtaacacaaaccagaatttttcaaatggaacagaaaatccaactactcctgtttcaacaacaccctc |
46630931 |
T |
|
| Q |
147 |
aaaggagaagaagagatggagttttagaagatcatcagcaacagcta |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46630932 |
aaaggagaagaagagatggagttttagaagatcatcagcaacagcta |
46630978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 15505121 - 15505201
Alignment:
| Q |
102 |
aaatggaacagaaaatccaactactcctgtttcaacaacaccctcaaaggagaagaagagatggagttttagaagatcatcagc |
185 |
Q |
| |
|
||||||||| |||||||| |||||||| | ||||||||||| ||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
15505121 |
aaatggaactgaaaatcctactactccaatctcaacaacacc---aaaggagaaaagaagatggagtttcagaagatcatcagc |
15505201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University