View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0939_low_6 (Length: 656)
Name: NF0939_low_6
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 170 - 627
Target Start/End: Original strand, 53838754 - 53839211
Alignment:
| Q |
170 |
atatgaaaaattagcaaaggacacacataatgatatgtatttgcatcaaacataatggttggagccaaacacatgaataacatttttaaaataaaataca |
269 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||| | |
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| T |
53838754 |
atatgaaaaattagcaaatgacacacataatgatatgtatttgcatcaaacataatggttggaaccaaacgcatgaataacatcgttaaaataaaataaa |
53838853 |
T |
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| Q |
270 |
aaaactaattcaatatcaacattatctcacgtcctcttatgccatgcctacttgtatatcaaaatcacaaaataataataatccaaataacnnnnnnnct |
369 |
Q |
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| T |
53838854 |
aaaacaaattcaatatcaacattatctcacgtcctcttataccatgcctacttgtatatcaaaatcacaaaataataataatccaaataacaagaaaact |
53838953 |
T |
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| Q |
370 |
gtgtctttcctctatgttcaccaattttgtgtagcgtactaaatttgtatgtggcgctacctgtgnnnnnnnnntttgaaaatcaattttgttcaagaag |
469 |
Q |
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| T |
53838954 |
gtgtctttcctctatgttcaccaattttgtgtagtgtactaaatttgtatgtggcgctacctgtgaaataaaaatttgaaaatcaattttgttcaagaag |
53839053 |
T |
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| Q |
470 |
aggtttacaaatttcttgaatgggaggggcattccactgagcagtaatatttttcaactgaacgaaatcattaacacaatcatcaaatttcaaagagtga |
569 |
Q |
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| T |
53839054 |
aggtttacaaatttcttgaatgggaggggcattccactgagcagtaatatttttcaactgaacgaaatcattaacacaatcatcaaatttcaaagagtga |
53839153 |
T |
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| Q |
570 |
atttgcttcctagcattagcaaatttctttccagcaactttatcaaaaatcttctccc |
627 |
Q |
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| T |
53839154 |
atttgcttcctagcattagcaaatttctttccagcaactttatcaaaaatcttctccc |
53839211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 53838170 - 53838299
Alignment:
| Q |
41 |
cattagcatccaaacattcacgacaataaaagctttgaagataaacactagcatcctattgatgttaattagcatttacaaagatgaacgtcaaaattga |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53838170 |
cattagcatccaaacattcacgacaataaaagctttgaagataaacactagcatcctattgatgttaattagcatttacaaagatgaacgtcaaaattga |
53838269 |
T |
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| Q |
141 |
agcttattttgtattaaaagtgtatctaaata |
172 |
Q |
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| T |
53838270 |
agctta--ttgtattaaaagtgtatctaaata |
53838299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 53832270 - 53832388
Alignment:
| Q |
46 |
gcatccaaacattcacgacaataaaagctttgaagataaacactagcatcctattgatgttaattagcatttacaaagatgaacgtcaaaattgaagctt |
145 |
Q |
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| T |
53832270 |
gcatccaaacattcacgacaataaaagctttgaagataaacactagcatcctattgatgttaattagcatttacaaagatgaacgtcaaaattgaagttt |
53832369 |
T |
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| Q |
146 |
attttgtattaaaagtgta |
164 |
Q |
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| T |
53832370 |
attttgtattaaaagtgta |
53832388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 449 - 627
Target Start/End: Original strand, 53831123 - 53831302
Alignment:
| Q |
449 |
aaatcaattttgttcaagaa-gaggtttacaaatttcttgaatgggaggggcattccactgagcagtaatattttt-caactgaacgaaatcattaacac |
546 |
Q |
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|||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||| || |||| |||||||| ||||||||| |||||| ||| | |
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| T |
53831123 |
aaatcaattttgttgaagaatggggtttacaaatttcttcaatgggaggggcattccattggccagtgatattttttcaactgaacaaaatcacgaacgc |
53831222 |
T |
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| Q |
547 |
aatcatcaaatttcaaagagtgaatttgcttcctagcattagcaaatttctttccagcaactttatcaaaaatcttctccc |
627 |
Q |
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| T |
53831223 |
aatcgtcaaatttcaaagattga-tttgcttcctagcattagcaaatttctctccagcaactctatcaaaaatcttctccc |
53831302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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