View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0939_low_9 (Length: 581)
Name: NF0939_low_9
Description: NF0939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0939_low_9 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 23)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Complemental strand, 30484927 - 30484401
Alignment:
| Q |
11 |
caaaggctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30484927 |
caaaggctcaaaagctatcagacaacttagttcacatcaaagctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
30484828 |
T |
|
| Q |
111 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30484827 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactcagaggatttacctctttcaaaccaaag |
30484728 |
T |
|
| Q |
211 |
aacatcaagtttcgccatgagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgg |
310 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| ||| |||||||||| | ||||||||||||||||| || |||| |
|
|
| T |
30484727 |
aacatcatgtttcgccatgagattggtaacaggttgaaagagattacaaggaggttagatgatattgctgaaagaaagaacaagttttctctacagacgg |
30484628 |
T |
|
| Q |
311 |
gtgtaactcttagggaaagcccagatcaagctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaaga |
410 |
Q |
| |
|
||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
30484627 |
gtgaaactcttagggtaatcccagatcaagtagctgaagggcgccaaaccagctccacccctcttgaatcaaaagcattaggaagagacgatgataaaga |
30484528 |
T |
|
| Q |
411 |
aaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgtt |
510 |
Q |
| |
|
|| ||||||| |||||||||| ||| ||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30484527 |
aaagattgtcgagtttcttctcacctatgcgaaggactctaacttcatttctgtctatcccattgttggtttaggtggtattggaaaaacaactcttgtt |
30484428 |
T |
|
| Q |
511 |
caattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30484427 |
caattgatctacaatgatgttagggtg |
30484401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Original strand, 30712008 - 30712534
Alignment:
| Q |
11 |
caaaggctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30712008 |
caaaggttcaaaagctatcagacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
30712107 |
T |
|
| Q |
111 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
30712108 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttttcgactgagaggatttacctctttcaaactaaag |
30712207 |
T |
|
| Q |
211 |
aacatcaagtttcgccatgagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgg |
310 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||| || | || |
|
|
| T |
30712208 |
aacatcatgtttcgccatgagattggtaacaggttcaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
30712307 |
T |
|
| Q |
311 |
gtgtaactcttagggaaagcccagatcaagctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaaga |
410 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| | | ||||||||| |||||||||| |
|
|
| T |
30712308 |
gtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccagctccacccctcttgaatcaaaagcgctgggaagagacaatgataaaga |
30712407 |
T |
|
| Q |
411 |
aaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgtt |
510 |
Q |
| |
|
|| ||||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30712408 |
aaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggtttaggtggtattggaaaaacaactcttgtt |
30712507 |
T |
|
| Q |
511 |
caattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30712508 |
caattgatctacaatgatgttagggtg |
30712534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Original strand, 30337105 - 30337631
Alignment:
| Q |
11 |
caaaggctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337105 |
caaaggctcaaaagctatcagacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
30337204 |
T |
|
| Q |
111 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337205 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaag |
30337304 |
T |
|
| Q |
211 |
aacatcaagtttcgccatgagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| || | || |
|
|
| T |
30337305 |
aacatcaagtttcgccatgagatcggtaacaggttgaaagagattacaaggaggttagataatattgctgaacgtaagaacaagttttctctacagatgg |
30337404 |
T |
|
| Q |
311 |
gtgtaactcttagggaaagcccagatcaagctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaaga |
410 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||| | |||| |||||||||| ||| |||| | ||||||||| |
|
|
| T |
30337405 |
gtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaaga |
30337504 |
T |
|
| Q |
411 |
aaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgtt |
510 |
Q |
| |
|
|| |||||| |||||||||| |||| ||||||||||||||||| |||| ||||||||| | ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
30337505 |
aaagattgttgagtttcttctcacccaagcgaaggactctgacttcctttccgtctatcccatagttggtttaggtggtgttggaaaaacaactcttgtt |
30337604 |
T |
|
| Q |
511 |
caattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
30337605 |
caattggtctacaatgatgttagggtg |
30337631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Complemental strand, 30437324 - 30436813
Alignment:
| Q |
11 |
caaaggctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
110 |
Q |
| |
|
|||||||| |||| |||||| || ||||||| ||||||||||| |||||||||||||||| |||| |||| ||||||| || |||||| ||||| | |
|
|
| T |
30437324 |
caaaggctgaaaacctatcaaccaccttagttgacatcaaggctgttcttgaagatgctgaaaagagacaagtcaaagacaacttcattaaggtatggct |
30437225 |
T |
|
| Q |
111 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| ||||||||||| ||| || ||||| || |
|
|
| T |
30437224 |
acaagacctcaaagatgctgtttatgtgctcgatgacatccttgatgagtgttcgatcaagtctagtcgactgagaaaattcacatctttaaa------- |
30437132 |
T |
|
| Q |
211 |
aacatcaagtttcgccatgagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgg |
310 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30437131 |
--------gtttcgccataagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgg |
30437040 |
T |
|
| Q |
311 |
gtgtaactcttagggaaagcccagatcaagctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaaga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30437039 |
gtgtaactcttagggaaagcccagatcaagctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaaga |
30436940 |
T |
|
| Q |
411 |
aaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgtt |
510 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30436939 |
aaagattgtccagtttcttcttacccttgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtattggaaaaacaactcttgtt |
30436840 |
T |
|
| Q |
511 |
caattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30436839 |
caattgatctacaatgatgttagggtg |
30436813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Complemental strand, 30061898 - 30061372
Alignment:
| Q |
11 |
caaaggctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
110 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30061898 |
caaaggttcaaaagctatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
30061799 |
T |
|
| Q |
111 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaag |
210 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30061798 |
acaagacctcaaagatggtgtttatgtgctcgatgatatccttgatgagtactcgatcaagtcttgtcgactgagaggatttacctctttcaaaccaaag |
30061699 |
T |
|
| Q |
211 |
aacatcaagtttcgccatgagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgg |
310 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||| || | || |
|
|
| T |
30061698 |
aacatcatgtttcgccatgagattggtaacaggttcaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
30061599 |
T |
|
| Q |
311 |
gtgtaactcttagggaaagcccagatcaagctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaaga |
410 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |||||||||||||||||| |||||| | |||| |||||||||| ||| |||| | ||||||||| |
|
|
| T |
30061598 |
gtggcactcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaaga |
30061499 |
T |
|
| Q |
411 |
aaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgtt |
510 |
Q |
| |
|
|| |||||| |||||||||| |||| || | |||||||||||| |||| ||||||||| | ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
30061498 |
aaagattgttgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtgttggaaaaacaactcttgtt |
30061399 |
T |
|
| Q |
511 |
caattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
30061398 |
caattggtctacaatgatgttagggtg |
30061372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Complemental strand, 30751172 - 30750646
Alignment:
| Q |
11 |
caaaggctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30751172 |
caaaggctcaaaagctatcagacaacttagttcgcatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
30751073 |
T |
|
| Q |
111 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30751072 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgattaagtcttgtcgactgagaggatgtacctctttcaaaccaaag |
30750973 |
T |
|
| Q |
211 |
aacatcaagtttcgccatgagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgg |
310 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||| || | || |
|
|
| T |
30750972 |
aacatcatgtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
30750873 |
T |
|
| Q |
311 |
gtgtaactcttagggaaagcccagatcaagctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaaga |
410 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||| | |||| |||||||||| ||| |||| | ||||||||| |
|
|
| T |
30750872 |
gtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaaga |
30750773 |
T |
|
| Q |
411 |
aaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgtt |
510 |
Q |
| |
|
|| ||||| |||||||||| |||| || | |||||||||||| |||| ||||||||| | ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
30750772 |
aaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtgttggaaaaacaactcttgtt |
30750673 |
T |
|
| Q |
511 |
caattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
30750672 |
caattggtctacaatgatgttagggtg |
30750646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 537
Target Start/End: Original strand, 30675868 - 30676394
Alignment:
| Q |
11 |
caaaggctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
110 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30675868 |
caaaggttcaaaagctatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
30675967 |
T |
|
| Q |
111 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||| ||| ||||||| ||||| ||||||||||| |
|
|
| T |
30675968 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtattcaatcaagtctggtcaacttagaggatcatcctctctcaaaccaaag |
30676067 |
T |
|
| Q |
211 |
aacatcaagtttcgccatgagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgg |
310 |
Q |
| |
|
||||||| ||||||| ||||||||| |||||||| |||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||| || | || |
|
|
| T |
30676068 |
aacatcatgtttcgcagtgagatcggcaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
30676167 |
T |
|
| Q |
311 |
gtgtaactcttagggaaagcccagatcaagctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaaga |
410 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |||||||||||||||||| |||| | | |||| |||||||||| ||| |||| | |||| |||| |
|
|
| T |
30676168 |
gtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctcaattattgctgaatcaaaagtgtttggacgagaagttgatcaaga |
30676267 |
T |
|
| Q |
411 |
aaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgtt |
510 |
Q |
| |
|
|| ||||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||||||||||| |
|
|
| T |
30676268 |
aaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccatttttggtttaggtggtattggaaaaacaactcttgtt |
30676367 |
T |
|
| Q |
511 |
caattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
30676368 |
caattgatcttcaatgatgttagggtg |
30676394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 46 - 537
Target Start/End: Complemental strand, 29873665 - 29873174
Alignment:
| Q |
46 |
atcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatg |
145 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||| ||| ||| | |||||||||| ||||| ||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
29873665 |
atcaaggctgttcttgaagatgctgaaaagaaacaagtcacagaccgctctattaaggtatggctacaacaactcaaagatgttgtttatgtgctcgatg |
29873566 |
T |
|
| Q |
146 |
atatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggtt |
245 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||| ||| ||||||| | |||||| |||||||| ||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
29873565 |
atatccttgatgagtgctcgatcaagtctggtcaacttagaggatcaatctcttttaaaccaaataacatcatgtttcgccttgagatcggcaacaggtt |
29873466 |
T |
|
| Q |
246 |
gaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgggtgtaactcttagggaaagcccagatcaagctgct |
345 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||||| ||||||||||||||| ||| | |||| | | ||| ||||||| || || ||| ||| |
|
|
| T |
29873465 |
gaaagagattacaaggagattggatgatattgctgatagtaagaacaagttttttctacgggagggtactattgttaaggaaagctcaaatgaagtagct |
29873366 |
T |
|
| Q |
346 |
gaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaagaaaggattgtccagtttcttcttacccctgcgaagg |
445 |
Q |
| |
|
||| |||| ||||||||||||| | ||||| ||||||| || ||| |||| ||||||||||||| |||||| |||||||||| |||| |||| || |
|
|
| T |
29873365 |
gaatggcgtcaaaccagctccattattgttgaaccaaaagtatttggacgagaagatgataaagaaaagattgttgagtttcttctcacccaagcgaggg |
29873266 |
T |
|
| Q |
446 |
actctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgttcaattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
29873265 |
actctgacttcctttccgtctatcccattgttggtttaggtggtattggaaaaacaactctcgttcaattggtctacaatgatgttagggtg |
29873174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 46 - 537
Target Start/End: Complemental strand, 29854802 - 29854311
Alignment:
| Q |
46 |
atcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatg |
145 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||| ||| ||| | |||||||||| ||||| ||||| | |||||||||||||||||||||||||||| |
|
|
| T |
29854802 |
atcaatgctgttcttgaagatgctgaaaagaaacaagtcacagaccactctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatg |
29854703 |
T |
|
| Q |
146 |
atatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggtt |
245 |
Q |
| |
|
||||||||||||||| || ||| ||||| ||| ||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
29854702 |
atatccttgatgagtgttcaatcaagtctggtcaacttagaggattaacctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggtt |
29854603 |
T |
|
| Q |
246 |
gaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgggtgtaactcttagggaaagcccagatcaagctgct |
345 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||| ||||||||||||||| ||| | |||| | | ||| ||||||| || || ||| ||| |
|
|
| T |
29854602 |
gaaagagattacaaggaaattggatgatattgctgatagtaagaacaagttttttctacgggagggtactattgttaaggaaagctcaaatgaagtagct |
29854503 |
T |
|
| Q |
346 |
gaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaagaaaggattgtccagtttcttcttacccctgcgaagg |
445 |
Q |
| |
|
||| |||| ||||||||||||| | |||| |||||||||| ||| |||| ||||||||||||| |||||| |||||||||| |||| ||| || |
|
|
| T |
29854502 |
gaatggcgtcaaaccagctccattattgctgaaccaaaagtgtttggacgagaagatgataaagaaaagattgttgagtttcttctcacccaaacgaggg |
29854403 |
T |
|
| Q |
446 |
actctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgttcaattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
|||| ||||| |||| ||||||||| || |||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
29854402 |
actcagacttcctttccgtctatcccatttttggtttaggtggtgttggaaaaacaactcttcttcaattggtctacaatgatgttagggtg |
29854311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 42 - 537
Target Start/End: Complemental strand, 30401572 - 30401074
Alignment:
| Q |
42 |
tcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctcaaagatgctgtttatgtgctc |
141 |
Q |
| |
|
||||||| ||||| |||||| |||||||||||||| |||| ||||||| || ||||||| ||||| | ||| | |||||||||||||||||||||||| |
|
|
| T |
30401572 |
tcacatcgaggctgttcttgtagatgctgagaagagacaagtcaaagacagctatattaaggtatggctccaacaactcaaagatgctgtttatgtgctc |
30401473 |
T |
|
| Q |
142 |
gatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaaca |
241 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||| |||| | ||||||||| |||||||||||| |||||||| | ||||||| |||| |
|
|
| T |
30401472 |
gatgatatccttgatgagtgttcgatcgagtctgctcgacttggaggctcattctctttcaacccaaagaacatcgtgtttcgccgtcagatcggcaaca |
30401373 |
T |
|
| Q |
242 |
ggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctcc-atacggg--tgtaactcttagggaaagcccagatca |
338 |
Q |
| |
|
||||||||||||||||| | || |||||| ||||||||| ||||||||| ||| ||| | | | || |||| | ||||||||||| ||||| | |
|
|
| T |
30401372 |
ggttgaaagagattacaagaagattggatgatattgctgatattaagaacaaatttcttctacgagatggtactgtatatgttagggaaagctcagatga |
30401273 |
T |
|
| Q |
339 |
agctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaagaaaggattgtccagtttcttcttacccct |
438 |
Q |
| |
|
|| | |||| |||| |||| || ||||| | | || || ||||||| ||| || | ||||||||||||| |||| | |||||||||| |||| | |
|
|
| T |
30401272 |
agtagatgaatggcgtcaaatcaactccattattgctaaaccagaagtgtttggacgaaaagatgataaagaaaagatttttgagtttcttctcacccat |
30401173 |
T |
|
| Q |
439 |
gcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgttcaattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
|||| |||||||||||| |||| ||||| ||| ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30401172 |
gcgagggactctgacttcctttccgtctaccccattgttggtttaggtggtattggtaaaacaactcttgttcaattggtctacaatgatgttagggtg |
30401074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 11 - 532
Target Start/End: Original strand, 30240973 - 30241482
Alignment:
| Q |
11 |
caaaggctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
110 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| | ||||| || |||||||||||||||||||||||||| ||| ||| |||||||||| ||||| | |
|
|
| T |
30240973 |
caaaggctcaaaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaagaaacaagtcacagactgctctattaaggtatggct |
30241072 |
T |
|
| Q |
111 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaag |
210 |
Q |
| |
|
||| | |||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
30241073 |
gcaacaactcaaagatgttgtttatgtgctcgatgatatccttgatgagtgctcgatcaagtctagtcgactgagaggattaacctct------------ |
30241160 |
T |
|
| Q |
211 |
aacatcaagtttcgccatgagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| | | ||| ||||||| ||| || | |
|
|
| T |
30241161 |
---ctcaagtttcgccatgagatcggtaacaggttggaagagattaacgggaggttggatgatattgctgataggaggaagaagttttttctgcaggaag |
30241257 |
T |
|
| Q |
311 |
g---tgtaactcttagggaaagcccagatcaagctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataa |
407 |
Q |
| |
|
| || |||| || ||||||||||| || | | |||||| |||| ||||||||| | | | |||| |||||||||| ||| |||| || ||||| |
|
|
| T |
30241258 |
gtactggaactgttcgggaaagcccaaatgacgtagctgaatggcgtcaaaccagcgctattattactgaaccaaaagtgtttggacgagaagacgataa |
30241357 |
T |
|
| Q |
408 |
agaaaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactctt |
507 |
Q |
| |
|
| | | |||| ||||||||||||| |||| || |||||||| ||||| |||| ||||||||||| |||| ||||||||| | |||||||| |||||| |
|
|
| T |
30241358 |
aaagaagattatccagtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaaccactctt |
30241457 |
T |
|
| Q |
508 |
gttcaattgatctacaatgatgtta |
532 |
Q |
| |
|
|||||| | ||||||||||||||| |
|
|
| T |
30241458 |
cttcaatcggtctacaatgatgtta |
30241482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 47 - 537
Target Start/End: Complemental strand, 30208012 - 30207522
Alignment:
| Q |
47 |
tcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatga |
146 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||| ||| ||| | | |||||| ||| ||||| ||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
30208012 |
tcaacgctgttcttgaagatgctgagcagaagcaagtcatcaatcgctctataaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatga |
30207913 |
T |
|
| Q |
147 |
tatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttg |
246 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||| | | | | |||||||||||||||||||||| ||| | | |||||| || || || ||| |
|
|
| T |
30207912 |
tatccttgatgagtgctcgatcgagtctgctcgacttattgcctcatcatctttcaaaccaaagaacatcattttttgtcgtgagattggcaaaagattg |
30207813 |
T |
|
| Q |
247 |
aaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgggtgtaactcttagggaaagcccagatcaagctgctg |
346 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||| |||| ||||||||| | | | || |||| |||||||||| || | ||| || | |
|
|
| T |
30207812 |
aaagagattacaaggaggttagatgatattgctgaaagtaaaaacaagtttcatttaggagagaatggaacttttagggaaagatcaattgaagtagcag |
30207713 |
T |
|
| Q |
347 |
aagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaagaaaggattgtccagtttcttcttacccctgcgaagga |
446 |
Q |
| |
|
|| |||| ||||| ||||| | | |||| ||||||| || || |||| ||||||||||| | |||| || |||||||||| |||| |||| ||| |
|
|
| T |
30207712 |
aatggcgtcaaactagctctattattgctgaaccaaaagtatttgggcgagaagatgataaagagaagattatcgagtttcttctcacccaagcgaggga |
30207613 |
T |
|
| Q |
447 |
ctctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgttcaattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
||| ||||| |||| ||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
30207612 |
ctccgacttcctttccgtctatcccattgttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgctagggtg |
30207522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 46 - 263
Target Start/End: Original strand, 17417283 - 17417500
Alignment:
| Q |
46 |
atcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatg |
145 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||| ||| ||| | ||||| ||| ||||| | ||| | |||||||||| |||||||||||| |||| |
|
|
| T |
17417283 |
atcaaggctgttcttgaagatgctgagcataaacaagtcacagatcgctctaacaaggtatggcttcaacaactcaaagatgttgtttatgtgctagatg |
17417382 |
T |
|
| Q |
146 |
atatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggtt |
245 |
Q |
| |
|
|||| |||||||||| ||| ||||||||| |||| || ||||| | ||| |||||||||||||||||||| ||||||| ||||||||| | ||||| |
|
|
| T |
17417383 |
atattcttgatgagtgctcaatcgagtctggtcggcttagaggctcatcctatttcaaaccaaagaacatcatatttcgccgtgagatcggccaaaggtt |
17417482 |
T |
|
| Q |
246 |
gaaagagattacagggag |
263 |
Q |
| |
|
| ||||||||||| |||| |
|
|
| T |
17417483 |
ggaagagattacaaggag |
17417500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 46 - 528
Target Start/End: Complemental strand, 30476866 - 30476384
Alignment:
| Q |
46 |
atcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatg |
145 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| ||| ||| | |||||||||| ||||| | ||| | |||||||||||||| |||||||| |||| |
|
|
| T |
30476866 |
atcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatg |
30476767 |
T |
|
| Q |
146 |
atatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggtt |
245 |
Q |
| |
|
|||| |||||||| | || || || ||| || |||| | || | ||| |||||| | ||||||||| |||||||| ||| ||||| || ||||| |
|
|
| T |
30476766 |
atattcttgatgaatgttccattgaatctagtagacttaaagcctcgtcctgtttcaacctaaagaacattgtgtttcgccgtgacatcggcaaaaggtt |
30476667 |
T |
|
| Q |
246 |
gaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgggtgtaactcttagggaaagcccagatcaagctgct |
345 |
Q |
| |
|
|||||| |||||| |||| || |||| ||||||||| |||| |||||||| | | | |||||| | |||||||||| ||| || ||| |||| |
|
|
| T |
30476666 |
gaaagaaattacaaggagattcgatcaaattgctgaaagtaaagacaagtttcttttacgagagggtgtcgttgttagggaaaggccaaatgaagttgct |
30476567 |
T |
|
| Q |
346 |
gaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaagaaaggattgtccagtttcttcttacccctgcgaagg |
445 |
Q |
| |
|
||| |||||||||| ||||||| | |||| | |||||||| ||| ||| ||||||| ||| ||||||||| |||||||||| |||| ||| | | |
|
|
| T |
30476566 |
gaatggcgccaaacaagctccattattgctgaacccaaagtgtttggacgagtagatgatagagagaggattgtcgagtttcttctcacccaagcgcaag |
30476467 |
T |
|
| Q |
446 |
actctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgttcaattgatctacaatgat |
528 |
Q |
| |
|
|||||||| | || ||||||| ||||||| |||||||| | || |||||||| |||| |||| || ||||||||||| |
|
|
| T |
30476466 |
tatctgacttcctatccatctatcctattgttggcctaggtggtgttggtaaaacaacacttgctcaaatggtctacaatgat |
30476384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 30329426 - 30329664
Alignment:
| Q |
16 |
gctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaag |
115 |
Q |
| |
|
||||||||||||||| || ||||| || ||||||| | |||||||||||| |||| | || ||| || ||| | |||||||||| ||||| | ||| |
|
|
| T |
30329426 |
gctcaaaagctatcaaccaccttagatcttatcaaggttgttcttgaagatgttgagcataagcaagtctcagaccgctctattaagatatggcttcaac |
30329525 |
T |
|
| Q |
116 |
acctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacat |
215 |
Q |
| |
|
| ||||||||| | | |||||||| ||||||||||||||||||| || |||||||||| ||||| | ||||| | |||||||||||||||||||||| |
|
|
| T |
30329526 |
aaatcaaagatgatatatatgtgcttgatgatatccttgatgagtgcttgatcgagtctggtcgaattagaggctcatcctctttcaaaccaaagaacat |
30329625 |
T |
|
| Q |
216 |
caagtttcgccatgagatcggtaacaggttgaaagagattac |
257 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
30329626 |
tgtatttcgccatgagatc---aataggttgaaagaaattac |
30329664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 414 - 537
Target Start/End: Original strand, 30330192 - 30330315
Alignment:
| Q |
414 |
gattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgttcaa |
513 |
Q |
| |
|
||||||| |||||||||| |||| |||| |||| ||||||| |||| |||||||| | ||||||||||| ||||| |||||||||||| |||||| | |
|
|
| T |
30330192 |
gattgtcaagtttcttctcacccaagcgagggacactgacttcctttccatctatcccatagttggtttaggaggtattggaaaaacaactattgttcga |
30330291 |
T |
|
| Q |
514 |
ttgatctacaatgatgttagggtg |
537 |
Q |
| |
|
|||||| || ||||| |||||||| |
|
|
| T |
30330292 |
ttgatccacgatgatattagggtg |
30330315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 458 - 537
Target Start/End: Original strand, 17417620 - 17417699
Alignment:
| Q |
458 |
tttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgttcaattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
|||| ||||||||| | ||||| ||||||||||| || ||||||||||| | ||||||| |||||||||||||||||||| |
|
|
| T |
17417620 |
tttcagtctatcccatagttgggttaggtggtattggtaaaacaactctagctcaattggtctacaatgatgttagggtg |
17417699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 422 - 529
Target Start/End: Complemental strand, 17984013 - 17983906
Alignment:
| Q |
422 |
agtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgttcaattgatcta |
521 |
Q |
| |
|
|||||||||| |||| |||| | ||||||||| |||| ||||||||| ||||||| ||||||||| | |||||||||||||||| ||||||| |||| |
|
|
| T |
17984013 |
agtttcttctcacccaagcgaggttctctgacttcctttccgtctatcccattgttgggttaggtggtgttggaaaaacaactcttgctcaattggtcta |
17983914 |
T |
|
| Q |
522 |
caatgatg |
529 |
Q |
| |
|
||| |||| |
|
|
| T |
17983913 |
caacgatg |
17983906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 515
Target Start/End: Original strand, 30520589 - 30520709
Alignment:
| Q |
395 |
gagacgatgataaagaaaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcgg |
494 |
Q |
| |
|
|||| ||||||||||| | ||||||| |||||||||| |||| || |||| ||||||| | |||| ||||||| ||||||| ||||||||||| || |
|
|
| T |
30520589 |
gagaagatgataaagagaagattgtcgagtttcttctcacccaagcaaagggctctgacctcctttccatctatccaattgttggcttaggtggtattgg |
30520688 |
T |
|
| Q |
495 |
aaaaacaactcttgttcaatt |
515 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
30520689 |
gaaaacaactcttgctcaatt |
30520709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 515
Target Start/End: Original strand, 30560929 - 30561049
Alignment:
| Q |
395 |
gagacgatgataaagaaaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcgg |
494 |
Q |
| |
|
|||| ||||||||||| | ||||||| |||||||||| |||| || |||| ||||||| | |||| ||||||| ||||||| ||||||||||| || |
|
|
| T |
30560929 |
gagaagatgataaagagaagattgtcgagtttcttctcacccaagcaaagggctctgacctcctttccatctatccaattgttggcttaggtggtattgg |
30561028 |
T |
|
| Q |
495 |
aaaaacaactcttgttcaatt |
515 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
30561029 |
gaaaacaactcttgctcaatt |
30561049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 16415432 - 16415393
Alignment:
| Q |
46 |
atcaaggctattcttgaagatgctgagaagaaacaattca |
85 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
16415432 |
atcaaggctactcttgaagatgctgaggagaaacaattca |
16415393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 30520207 - 30520322
Alignment:
| Q |
13 |
aaggctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttac |
112 |
Q |
| |
|
||||||| |||||||||| || ||||| | |||||||| |||||||||||||||||||||||||| | | ||| | |||||| ||| ||||| | | |
|
|
| T |
30520207 |
aaggctctaaagctatcaaccaccttagatttgatcaaggccgttcttgaagatgctgagaagaaacaaataacagaccgctctataaaggtatggcttc |
30520306 |
T |
|
| Q |
113 |
aagacctcaaagatgc |
128 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
30520307 |
aacaactcaaagatgc |
30520322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 30560547 - 30560662
Alignment:
| Q |
13 |
aaggctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttac |
112 |
Q |
| |
|
||||||| |||||||||| || ||||| | |||||||| |||||||||||||||||||||||||| | | ||| | |||||| ||| ||||| | | |
|
|
| T |
30560547 |
aaggctctaaagctatcaaccaccttagatttgatcaaggccgttcttgaagatgctgagaagaaacaaataacagaccgctctataaaggtatggcttc |
30560646 |
T |
|
| Q |
113 |
aagacctcaaagatgc |
128 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
30560647 |
aacaactcaaagatgc |
30560662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 529
Target Start/End: Original strand, 20295162 - 20295680
Alignment:
| Q |
11 |
caaaggctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20295162 |
caaaggctcgaaagctatcagacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagcaatggtt |
20295261 |
T |
|
| Q |
111 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| | |
|
|
| T |
20295262 |
acaagacctcaaagatgctgtttatgtgctcggtgatatccttgatgagtactcgatcgagtctggtcgactgagaggatttaactctttcaaaccaatg |
20295361 |
T |
|
| Q |
211 |
aacatcaagtttcgccatgagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgg |
310 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| |||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||| || | || |
|
|
| T |
20295362 |
aacatcgcgtttcgccatgagatcggtagcaggtttaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctacagatgg |
20295461 |
T |
|
| Q |
311 |
gtgtaactcttagggaaagcccagatcaagctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaaga |
410 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||| | |
|
|
| T |
20295462 |
gtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccagctccacccctcttgaatcaaaagcattgggaagagacgatgataaaaa |
20295561 |
T |
|
| Q |
411 |
aaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgtt |
510 |
Q |
| |
|
|| ||||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20295562 |
aaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggtttaggtggtattggaaaaacaactcttgtt |
20295661 |
T |
|
| Q |
511 |
caattgatctacaatgatg |
529 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
20295662 |
caattagtctacaatgatg |
20295680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 45 - 297
Target Start/End: Complemental strand, 52353453 - 52353201
Alignment:
| Q |
45 |
catcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgat |
144 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||| ||| | ||||||||| ||||| | || | ||||||||||||||||| || |||||| |
|
|
| T |
52353453 |
catcaaggcagttcttgaagatgctgagcagaaacaagtcacagaccgctctattaaagtatggcttcagcaactcaaagatgctgtttacgttctcgat |
52353354 |
T |
|
| Q |
145 |
gatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggt |
244 |
Q |
| |
|
|||||||||||||| | |||||| | ||| ||||||| | || || | || ||||||||||| || || |||||| ||||| || || ||||| | |
|
|
| T |
52353353 |
gatatccttgatgaatgttcgatcaaatctagtcgacttatgggtttatcgtcattcaaaccaaaaaatattgtgtttcgtcatgatattggaaacagat |
52353254 |
T |
|
| Q |
245 |
tgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttt |
297 |
Q |
| |
|
||||||| |||||| |||| || |||| |||||||| | |||||||||||| |
|
|
| T |
52353253 |
tgaaagaaattacaaggagattcgatcaagttgctgaaaggaagaacaagttt |
52353201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 473 - 533
Target Start/End: Complemental strand, 52353023 - 52352963
Alignment:
| Q |
473 |
ttgttggtttaggtggtatcggaaaaacaactcttgttcaattgatctacaatgatgttag |
533 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52353023 |
ttgttggtttaggtggtgttggtaaaacaactcttgttcaattggtctacaatgatgttag |
52352963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 489
Target Start/End: Complemental strand, 13617689 - 13617647
Alignment:
| Q |
447 |
ctctgactttatttctgtctatcccgttgttggtttaggtggt |
489 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
13617689 |
ctctgactttctttctgactatcccattgttggtttaggtggt |
13617647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 537
Target Start/End: Complemental strand, 26708843 - 26708332
Alignment:
| Q |
11 |
caaaggctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
110 |
Q |
| |
|
|||||||| |||| |||||| || ||||||| |||| | ||| ||||||||||||||||||||| |||| ||| ||| || ||||||| ||||| | |
|
|
| T |
26708843 |
caaaggctgaaaacctatcaaccaccttagttgacattagggccgttcttgaagatgctgagaagagacaagtcacagacaactttattaaggtatggct |
26708744 |
T |
|
| Q |
111 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaag |
210 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| ||||||||||| | ||||||| ||||| ||||||||| | ||| |||||||| || |
|
|
| T |
26708743 |
acaagacctcaaagatgttgtatatgtgctcgatgacatccttgatgaatgctcgatcaagtctagtcgactgaaaaaattcacctctttaaa------- |
26708651 |
T |
|
| Q |
211 |
aacatcaagtttcgccatgagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgg |
310 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
26708650 |
--------gtttcgccataagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctacagacgg |
26708559 |
T |
|
| Q |
311 |
gtgtaactcttagggaaagcccagatcaagctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaaga |
410 |
Q |
| |
|
||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
26708558 |
gtggaactcttagggaaagcccatatcaagtagctgaagggcgccaaaccagctccacccctcttgaaacaaaagcgttgggaagagacgatgataaaga |
26708459 |
T |
|
| Q |
411 |
aaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgtt |
510 |
Q |
| |
|
|| ||||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
26708458 |
aaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggcttaggtggtattggaaaaacaactcttgtt |
26708359 |
T |
|
| Q |
511 |
caattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
|| ||||||||||| |||||||||||| |
|
|
| T |
26708358 |
cagttgatctacaacgatgttagggtg |
26708332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 8e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 50 - 537
Target Start/End: Original strand, 25292566 - 25293053
Alignment:
| Q |
50 |
aggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatgatat |
149 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||| ||| | |||||||||| ||||| ||||| | |||||||||| ||| ||||||||||||||||| |
|
|
| T |
25292566 |
aggctgttcttgaagatgctgagcagaaacaagtcacagatcgctctattaaggtatggctacaacaactcaaagatgttgtatatgtgctcgatgatat |
25292665 |
T |
|
| Q |
150 |
ccttgatgagtactcgatcgagtcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttgaaa |
249 |
Q |
| |
|
||||||||||| | |||| | ||| ||||||| ||||| | |||||||||||||||||||||||| ||||| |||| | || || |||| ||||||| |
|
|
| T |
25292666 |
ccttgatgagtgattgatcaaatctagtcgacttagaggctcatcctctttcaaaccaaagaacatcatgtttcaccattacattggcaacaagttgaaa |
25292765 |
T |
|
| Q |
250 |
gagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgggtgtaactcttagggaaagcccagatcaagctgctgaag |
349 |
Q |
| |
|
||||||||| |||| |||||| |||||||| | ||||||||||||| ||| | ||||| |||| ||||||||||| || | ||| |||||| |
|
|
| T |
25292766 |
gagattacaaggagattggatgatattgctgcaactaagaacaagtttcttcttcgacagggtggaactgttagggaaagctcaactgaagtagctgaat |
25292865 |
T |
|
| Q |
350 |
ggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaagaaaggattgtccagtttcttcttacccctgcgaaggactc |
449 |
Q |
| |
|
||||||||| || || | | ||| ||||||| || ||| |||| ||||||||||| | || |||| ||||||||||||||| || | |||||| |
|
|
| T |
25292866 |
agcgccaaactagttctattattgccgaaccaaaagtatttggacgagaagatgataaagagaagactgtcgagtttcttcttacccaagcaagggactc |
25292965 |
T |
|
| Q |
450 |
tgactttatttctgtctatcccgttgttggtttaggtggtatcggaaaaacaactcttgttcaattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
|||||| |||| ||| ||||| ||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25292966 |
tgacttcctttccgtccatcccattgttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtg |
25293053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 380 - 537
Target Start/End: Original strand, 7580668 - 7580825
Alignment:
| Q |
380 |
caaaagtgttaggaagagacgatgataaagaaaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttgg |
479 |
Q |
| |
|
|||| ||||| ||| |||| ||||||||||| |||||||| |||||||||| |||| |||| |||||| ||||| |||| |||||||| ||||||| |
|
|
| T |
7580668 |
caaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactcggacttcctttccgtctatccaattgttgg |
7580767 |
T |
|
| Q |
480 |
tttaggtggtatcggaaaaacaactcttgttcaattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||||| ||||||| |||| ||||||| |
|
|
| T |
7580768 |
tttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtg |
7580825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 386 - 537
Target Start/End: Complemental strand, 7100572 - 7100421
Alignment:
| Q |
386 |
tgttaggaagagacgatgataaagaaaggattgtccagtttcttcttacccctgcgaaggactctgactttatttctgtctatcccgttgttggtttagg |
485 |
Q |
| |
|
|||| ||| |||| ||||||||||| | |||||| |||||||||| |||| || |||||||||||||| | || ||||||||| |||| |||||||| |
|
|
| T |
7100572 |
tgtttggacgagaagatgataaagagaagattgttgagtttcttctcacccaagcaaaggactctgacttcctatccgtctatcccattgtcggtttagg |
7100473 |
T |
|
| Q |
486 |
tggtatcggaaaaacaactcttgttcaattgatctacaatgatgttagggtg |
537 |
Q |
| |
|
|||| | ||||||||||||||| ||||||| | |||||||||| ||||||| |
|
|
| T |
7100472 |
tggtgttggaaaaacaactctttctcaattggtttacaatgatgatagggtg |
7100421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 7100894 - 7100785
Alignment:
| Q |
49 |
aaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatgata |
148 |
Q |
| |
|
|||||| |||||||||| ||||| ||||| ||||| | ||| | ||||||| | ||||| | || | ||||||||||| || |||||||| ||||||| |
|
|
| T |
7100894 |
aaggctgttcttgaagacgctgaaaagaagcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcggtgtatgtgcttgatgata |
7100795 |
T |
|
| Q |
149 |
tccttgatga |
158 |
Q |
| |
|
|||||||||| |
|
|
| T |
7100794 |
tccttgatga |
7100785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 7580308 - 7580457
Alignment:
| Q |
11 |
caaaggctcaaaagctatcagacaacttagttcacatcaaggctattcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggtt |
110 |
Q |
| |
|
|||||||||||||||||||| | ||||| | ||||||||| ||||| |||| ||||| ||||| ||||| | || | |||||| | ||||||| |
|
|
| T |
7580308 |
caaaggctcaaaagctatcaagaaccttagaactgatcaaggctgttcttcaagacgctgaaaagaagcaattaactgaccgatctattcaaatatggtt |
7580407 |
T |
|
| Q |
111 |
acaagacctcaaagatgctgtttatgtgctcgatgatatccttgatgagt |
160 |
Q |
| |
|
|| | ||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
7580408 |
gcagcaactcaaagatgcggtgtatgtgcttgatgatatccttgatgagt |
7580457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 534 - 581
Target Start/End: Complemental strand, 7547294 - 7547247
Alignment:
| Q |
534 |
ggtgtgtgtagaagaagagggagcagctccccttctcaacattttttc |
581 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
7547294 |
ggtgtgtgtagaagaagagggagcaactccccttctctacattttttc |
7547247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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