View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0940_high_1 (Length: 701)
Name: NF0940_high_1
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 29 - 358
Target Start/End: Original strand, 42069551 - 42069883
Alignment:
| Q |
29 |
agaaaaagacactttttgcatgtggttgattgataaacctaactgcccttgctagggatcttggaatttctataaaataatgannnnnnnnatataaatt |
128 |
Q |
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| T |
42069551 |
agaaaaagacactttttgcatgtggttgattgataaacctaactgcccttgctagggatcttggaatttctataaaataatgattttttg-atataaatt |
42069649 |
T |
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| Q |
129 |
aaagttgtggtcacatgtctctctacctacgaattcattacacaattctattgtcctgcgtggaattccatttcaaattatatatataaaaggataccat |
228 |
Q |
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| T |
42069650 |
aaagttgtggtcacatgtctctctacctacgaattcattacacaattctattgtcctgcgtggaattccatttccaattatatatataaaaggataccat |
42069749 |
T |
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| Q |
229 |
gctccaagaaaaatattgttctctccaagttcaaaaatactccatacctatggggacttgtatttattttggcatgacaagtacttctgtaattttaaat |
328 |
Q |
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| T |
42069750 |
gctccaagaaaaatattgttctctccaagttcaaaaatactccatacctatggggacttgtatttattttggcatgacaagtacttctgtaattttaaat |
42069849 |
T |
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| Q |
329 |
----tatactacaaaaccctattgtactatgtgt |
358 |
Q |
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| T |
42069850 |
tatatatactacaaaatcctattgtattatgtgt |
42069883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 475 - 691
Target Start/End: Original strand, 42069912 - 42070128
Alignment:
| Q |
475 |
taataatacaaaacatgtatacttttaaattgttttctccatttatggctgaaaacctaaacccttgcacgactcgatgattattannnnnnncattccg |
574 |
Q |
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| T |
42069912 |
taataatacaaaacatgtatacttttaaattgttttctccatttatggctgaaaacctaaacccttgcacgactcgatgattattatttttttcattccg |
42070011 |
T |
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| Q |
575 |
taggtctacgatatcaaagatcaaattgaatatttattcacttcgtggaattgatcttttttcacttcatggatttgataattggtttctctattttgaa |
674 |
Q |
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| T |
42070012 |
tagttctacgatatcaaagatcaaattgaatatttattcacttcgtggaatttatcttttttcacttcatggatttgataattggtttctctattttgaa |
42070111 |
T |
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| Q |
675 |
attaacagtgacctttg |
691 |
Q |
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| T |
42070112 |
attaacagtgacctttg |
42070128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 456
Target Start/End: Original strand, 42069881 - 42069912
Alignment:
| Q |
425 |
tgtcaaaattattataaaaatgatgactcgtt |
456 |
Q |
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| T |
42069881 |
tgtcaaaattattataaaaatgatgactcgtt |
42069912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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