View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0940_high_11 (Length: 411)
Name: NF0940_high_11
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 99 - 404
Target Start/End: Complemental strand, 39487850 - 39487545
Alignment:
| Q |
99 |
ctccacaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39487850 |
ctccacaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatca |
39487751 |
T |
|
| Q |
199 |
cagatttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacac |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
39487750 |
cagatttagcattcatcaaactgcgccaagcatagctgggctggtagtcaatttgagcatccaaaaaacatgatctggcaaagtacatactcttgaacac |
39487651 |
T |
|
| Q |
299 |
ccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctcct |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39487650 |
ccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctctgaagccaagtcctcct |
39487551 |
T |
|
| Q |
399 |
ttgctt |
404 |
Q |
| |
|
|||||| |
|
|
| T |
39487550 |
ttgctt |
39487545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 346
Target Start/End: Original strand, 5806911 - 5807160
Alignment:
| Q |
98 |
actccacaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatct-ccatccgagatcaat |
196 |
Q |
| |
|
|||||| ||||||||||| | | ||||||||||||||||| ||||| ||| ||||||||||||| || ||||| ||||| || | | || |||||||| |
|
|
| T |
5806911 |
actccaaaccttgaagcttggtaactcaggaagccaagggtccttccatattctaacttgttgcccgtttccaattgaccacctgcaaaccaagatcaat |
5807010 |
T |
|
| Q |
197 |
cacagatttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaac |
296 |
Q |
| |
|
| ||||| ||||| ||| || | ||||||||| || ||||| || ||| | | || | |||||||| || ||| | ||||||||||||||| ||| |
|
|
| T |
5807011 |
tattgattttgcattacacaagcttctccaagcataactaggctgataaccactacgtgccttcaaaaaacttgttctcggaaagtacctactcttaaac |
5807110 |
T |
|
| Q |
297 |
acccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgctt |
346 |
Q |
| |
|
|||| |||||||| |||||||| ||| ||| || ||||| |||||||| |
|
|
| T |
5807111 |
acccatgaaaggagagagtgttcattggacatcagccgccaccattgctt |
5807160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 103 - 404
Target Start/End: Complemental strand, 46033968 - 46033668
Alignment:
| Q |
103 |
acaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacaga |
202 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46033968 |
acaccttgaagcttgacagttcaggaagccaaaggtctttccaaattttaactt-ttgcccattaccaatcgaccatctccatccgagatcaattacaga |
46033870 |
T |
|
| Q |
203 |
tttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacacccga |
302 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46033869 |
tttagcattcatcaaactacaccaagcatagctgggctggcagccaatttgagcatccaaaaaacatgatctggcaaagtacctactcttgaacacccga |
46033770 |
T |
|
| Q |
303 |
gaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctcctttgc |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46033769 |
gaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagtgccttgttaaaatcactgaagcctctgaagccaagtcctcctttgc |
46033670 |
T |
|
| Q |
403 |
tt |
404 |
Q |
| |
|
|| |
|
|
| T |
46033669 |
tt |
46033668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University