View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0940_high_12 (Length: 391)
Name: NF0940_high_12
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 316
Target Start/End: Original strand, 2263221 - 2263510
Alignment:
| Q |
30 |
gcttacaccgggtcgtgtcaatcaaatcaattcagcaaatgctttcatcaggtttgtgtgtgtgga----tatatgcaaaaggcagcatatgcatatgga |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
2263221 |
gcttacaccgggtcgtgtcaatcaaatcaattcagcaa-tgctttcatcaggtttgtgtgtgtggatggatatatgcaaaaggcaacatatgcatatgga |
2263319 |
T |
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| Q |
126 |
actggaaggagtaaatagaaatagaaaaattgatttacaattaccaaacaattaagggaagatttatattccaacactttccaaagctctgcttctttct |
225 |
Q |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2263320 |
actggaaggagtaaatagaaatagaaaaatagatttacatgtaccaaacaattaagggaagatttatattccaacactttccaaagctctgcttctttct |
2263419 |
T |
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| Q |
226 |
accaaacaattcgatatatattgtcactatagagaatctagctatctacactgtattgtctgcatcacattgaaaattaaaaaccataaat |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2263420 |
accaaacaattcgatatatattgtcacgttagagaatctagctatctacactgtattgtctgcatcacattgaaaattaaaaaccataaat |
2263510 |
T |
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