View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0940_high_22 (Length: 259)
Name: NF0940_high_22
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_high_22 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 259
Target Start/End: Original strand, 8061445 - 8061674
Alignment:
| Q |
30 |
ccaatttctctatattggatgctatatgatactcgtacttgtgaatcccctttaggacatgttgtcggagttctttgatatagaatgcacatctattatg |
129 |
Q |
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| T |
8061445 |
ccaatttctctatattggatgctatatgatactcgtactcgtgaatcccctttaggacattttgtcggagttctttgatatagaatgcacatctattatg |
8061544 |
T |
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| Q |
130 |
aagcatatcattggatgatacttaacaaacaatagtttcctaaatgtactatccacataaaagaaagcaagaaatagcttaaagttaagataatggctta |
229 |
Q |
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| T |
8061545 |
aagcatatctttggatgatacttaacaaacaatagtttcctaaatgtactatccacataaaagaaagcaagaaatagcttaaagttaagataatggctta |
8061644 |
T |
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| Q |
230 |
gtttagtttgaatcacaaaaatgattctat |
259 |
Q |
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| T |
8061645 |
gtttagtttgaatcacaaaaatgattctat |
8061674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 250
Target Start/End: Complemental strand, 7930946 - 7930820
Alignment:
| Q |
125 |
ttatgaagcatatcattggatgatacttaacaaa-caatagtttcctaaatgtactatccacataaaagaaagcaagaaatagcttaaagttaagataat |
223 |
Q |
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||||||||||| ||||| || |||||| ||||| ||| |||||||||| | || ||||||||||||||||| ||||||| ||||||||||||||| || |
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| T |
7930946 |
ttatgaagcatgtcattcaattatacttgacaaaacaacagtttcctaatt-taatatccacataaaagaaaagaagaaatggcttaaagttaagattat |
7930848 |
T |
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| Q |
224 |
ggcttagtttagttt-gaatcacaaaaa |
250 |
Q |
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| T |
7930847 |
ggcttagtttagtttagaatcacaaaaa |
7930820 |
T |
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