View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0940_high_25 (Length: 250)
Name: NF0940_high_25
Description: NF0940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0940_high_25 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 25146339 - 25146104
Alignment:
| Q |
15 |
agatggacatcatcatcaactctcttattagggcaaacagttattctaattatacaaaacctataataagaaactaggcaccaaaggtgattggtaggtt |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25146339 |
agatgaacatcatcatcaactctcttattagggcaaacagttattctaattatacaaaacctataataagaaactaggcaccaaaggtgattggtaggtt |
25146240 |
T |
|
| Q |
115 |
gcttcagccagctgactccaagaaaggttccaggtttggttgctgaattccgaggtagtggatgatcccagttcaaaacctgtaggaaaaacattctcat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25146239 |
gcttcagccagctgactccaagaaaggttccaggtttggttgctgaattccgaggtagtggatgatcccagttcaaaacctgtaggaaaaacattctcat |
25146140 |
T |
|
| Q |
215 |
ttgagacctttttctttttcgctgttcgctgttctt |
250 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
25146139 |
ttgtgacctttttctttttcgctgttcgatgttctt |
25146104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University